Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00325 ATGGCGTCCATTGGTGCACTCAAATTCTTCCTTTACTTACTTCCATGTCTCCTCAACTATCTACCTCATTCTCAAGGTAAGCAGAATTGGAATGGTGAGTACCCATTTATCAGGAGAGGAAGTTCATTGGAGCGTTCAGAGAATGGTGGTTATGACTATATAATAGTGGGAGGTGGCACTGCAGGGTGTCCATTGGCTGCAACTCTGTCTAAGAAATTCAAAGTTCTGGTGCTTGAAAGAGGAGGCGTCCCTTTCAACAACCCCAATGTGACATTTCTGCGAAACTTTCACATCACTTTGGCAGACACTTCTCCAACTTCGGCTTCCCAGTACTTCATTTCAACAGATGGAGTGCTCAATGCAAGAGGAAGGGTTTTGGGAGGTGGCAGTTCCATTAACGCTGGCTTCTACACTCGAGCAAACCCTAGATTTATAAGGAAGGTTGGGTGGGATACAAAGCTAGTGAACGAGTCTTATCCTTGGGTAGAGAAGCAGGTTGTTCATCGTCCAAAGTTTTCACATTGGCAGAGAGCAGTCAGGGACGGGCTTCTAGATGCTGGTGTGTCACCTTTTAATGGATTCACCTATGATCATAAGTATGGAACCAAAGTTGGTGGAACCATTTTTGACAGATTTGGCCGCCGCCACACCGCTGCCGAGTTGCTTGCTTCTGGGAATCCTAAGAAACTTACTGTCCTCGTCCATGCCACTGTCCAAAAGATTGTTTTTGATACAACAGGAAAAAAGCCAAAAGCCATTGGGGTTATTTTCAAGGATGAAAATGGAAAGCAGCATCAGGCATTTCTGGGAACTGGGAGGCAGAGTGAAGTGATTGTGTCTAGTGGGGCAATTGGCACTCCTCAATTGCTACTGCTCAGCGGAATTGGCCCCAGAGAAGAGCTTCAGAAATTCAACATCCCTGTAGTGCTTCACAATGAATTTGTCGGTAAAGGCATGGCTGATAACCCCATGAACACAATCTTTGTTCCTTCCAAGAGACCAGTTCAGCAGTCACTCATAGAAACTGTCGGTATAACCAATCTGGGTGTGTACATTGAGACTAGTTGTGGCTTTGGGCAGTCCAAAGACAGCATTCACTGTCACCATGGTATCTTGTCAGCTGAGATTGGGCAGCTGTCGACAATTCCACCAAAGCAAAGATCACGAGAAGCTGTTGAGGCATTTGTGAAGAGCAAGAAAGACATACCAATTGAAGCATTCAGGGGAGGGTTCATACTGTCAAAAGTTGCGAATCCTTGGTCAACAGGTGAACTGAGGTTGATAAACACCAACGTGGAGGAGAACCCTGCTGTTACCTTCAACTATTTCAGCCACCCTTATGATCTTAAGCGCTGCGTGGAGGGTATCCGCTTAGCCATAAAGGTTGTTCAGTCACAGCACGTCACAAACTACACTATGTGTGACAGACAAAGCGCAGAGAAAATGTTGAACATCAGTGTGCAGGCAAATATCAACCTCATACCCAAACATGCCAATGACACAAAGTCAATGGAACAGTTTTGTAGAGACTCTGTCATCACTATTTGGCACTACCATGGTGGGTGCCATGTGGGGAAAGTAGTAAACTCTGAGTATAAGGTTCTTGGTGTTGACAGACTCCGTGTGGTAGATGGCTCCACATTTTCTGAGTCCCCAGGAACCAATCCTCAAGCCACTGTCATGATGATGGGCAGGTACATGGGACTGAAGATTCTAAGAGACAGGTTGGGGAAATTGGGTGATATTTAA 1749 0.4568 MASIGALKFFLYLLPCLLNYLPHSQGKQNWNGEYPFIRRGSSLERSENGGYDYIIVGGGTAGCPLAATLSKKFKVLVLERGGVPFNNPNVTFLRNFHITLADTSPTSASQYFISTDGVLNARGRVLGGGSSINAGFYTRANPRFIRKVGWDTKLVNESYPWVEKQVVHRPKFSHWQRAVRDGLLDAGVSPFNGFTYDHKYGTKVGGTIFDRFGRRHTAAELLASGNPKKLTVLVHATVQKIVFDTTGKKPKAIGVIFKDENGKQHQAFLGTGRQSEVIVSSGAIGTPQLLLLSGIGPREELQKFNIPVVLHNEFVGKGMADNPMNTIFVPSKRPVQQSLIETVGITNLGVYIETSCGFGQSKDSIHCHHGILSAEIGQLSTIPPKQRSREAVEAFVKSKKDIPIEAFRGGFILSKVANPWSTGELRLINTNVEENPAVTFNYFSHPYDLKRCVEGIRLAIKVVQSQHVTNYTMCDRQSAEKMLNISVQANINLIPKHANDTKSMEQFCRDSVITIWHYHGGCHVGKVVNSEYKVLGVDRLRVVDGSTFSESPGTNPQATVMMMGRYMGLKILRDRLGKLGDI 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00325 582 Gene3D - 168 514 - -
Vimu4g00325 582 PIRSF Alcohol_oxidase 34 581 IPR012132 GO:0050660
Vimu4g00325 582 SUPERFAMILY FAD/NAD(P)-binding domain 50 574 IPR036188 -
Vimu4g00325 582 Gene3D - 51 564 IPR036188 -
Vimu4g00325 582 Pfam GMC oxidoreductase 51 323 IPR000172 GO:0016614|GO:0050660
Vimu4g00325 582 Pfam GMC oxidoreductase 419 565 IPR007867 GO:0016614
Vimu4g00325 582 ProSitePatterns GMC oxidoreductases signature 2. 282 296 IPR000172 GO:0016614|GO:0050660
Vimu4g00325 582 SUPERFAMILY FAD-linked reductases, C-terminal domain 319 521 - -
Vimu4g00325 582 PANTHER OSJNBA0019K04.7 PROTEIN 30 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00325 Vimu-Chr4 2382721 2387868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00325 7 580 Miscellaneous Gene Families AT3G56060 48.616 0.0 545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00325 K15403 - gmx:100784433 1052.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00325 4 2382721 2387868 Vimu4g00325 4 2382721 2387868 ECH
Vimu4g00325 4 2382721 2387868 Vimu11g02962 11 49314951 49320611 PCT