Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02962 ATGGCTTCAGTTGGTGCACTCAAATTCTTGTTGTTCCATGTTCTATGGCTCTGGAACTTTCTACCTTCTTGTCAAGGTGACAAGCACTGGCATGAAAAAAGTTACCCTTTTATCAGAAATGCAAGCTCATTCTCATCACCATCAATTTCAACAACCACATCCAACAATGAGTATGACTACATAATAGTGGGAGGTGGCACAGCAGGGTGTCCTTTGGCTGCAACCCTCTCTCAGAAGTTCAATGTTCTGATGCTTGAAAGAGGAGGTGTTCCTTTCACCAACCCCAATGTTTCATATCTTGAGAATTTCCACATTACCTTGGCAGATGTCTCACCAACTTCAGCTTCTCAATTCTTCGTTTCATCTGATGGAGTCTACAATTCAAGGGCCAGGATCTTAGGAGGTGGCAGTTCTATCAATGCTGGTTTCTACACCAGAGCAGATCCAAGGTTTATTAAGAAGGTGGGATGGGATATCAACCTAGTGAATCAGTCATATCCATGGATTGAAAACCAAATTGTTCACCGGCCAAAGTTTTCAGCATATCAAAGGGCAGTGAGGGACAGTCTTCTAGACTCTGGTGTGTCACCTTTCAATGGCTTCACCTATGATCATCTCTATGGAACAAAAGTTGGTGGAACCATTTTTGACAAATATGGCAGGCGCCACACAGCTGCTGAACTGCTTGCTTCAGGGAACCATGAAAAACTTACTGTTTTGGTCTATGCCACTGTCCAAAAGATTGTGTTTGATACAAAAGGAAAGAAACCAAAAGCTGTGGGGGTTATTTTCCAAGATGAGAATGGGAAACAGCATGAAGCTGTTCTGGCAAATGATAGGCATAGTGAAGTGATAATGTCTTCTGGGGCAATTGGGACTCCTCAACTGCTTATGCTTAGTGGAATTGGACCAAAAGAAGAACTCCAGAAGTTGAACATCCCAGTGATCCTTGACAACCACTTTGTTGGAAAAGGAATGGTAGACAATCCCATGAACACAATGTTTGTTCCTTCTGAAAGACCTGTTCATCAGTCACTCATAGAAACTGTTGGAATCACCAAGATGGGCGTGTACATTGAAGCTAGCAGTGGGTTTAGCCAGTCTAATGATAGCATTCATTGCCACCATGGTATTGTGTCAGCAGAGATTGGACAGCTTTCCACAATCCCTCCTAAGCAAAGATCACCAGAAGCTATCAAAGAATTTATCAAGAACAAGAAAGACCTACCTATTGAAGCATTTAAGGGAGGCTTTATTCTGTCAAAAGTTGCCAATCCTTGGTCAGTTGGTGAGCTCAAGCTGGTCAACACCAATGTGAAAGACAATCCATCTGTTGCCTTCAACTACTTCAGTCATCCATATGATCTTGAGCGCTGTGTTAAGGGGATCCGTTTGGCCATTAAGGTTGTCCAGTCAAAACATTTCACAAACTACACTTTAAGTGACAGAAAAACAGCAGAGGAACTCCTCAACCTCACTGTGAAGGCTAATGTCAACTTTATACCCAAGCATGCCCAAGACACAAAGTCTCTAAAGCAATTCTGCAAAGACACTGTGATCACAATTTGGCACTACCATGGAGGGTGCCGTGTGGGGAAGGTAGTCAACCCTGATTACATGGTCCTTGGTGTTGACAGACTCCGTGTGGTAGATGGCTCAACATTTGATGAATCACCAGGAACAAATCCTCAAGCCACTGTAATGATGATGGGCAGGTACATGGGACTGAAGATTTTGAGAGACAGGTTGGGGAAATTGGCAGACTTCAGACATAGCTACCTAGAAACCAACAAGGGTACGAAGTTTATACATTGA 1815 0.4314 MASVGALKFLLFHVLWLWNFLPSCQGDKHWHEKSYPFIRNASSFSSPSISTTTSNNEYDYIIVGGGTAGCPLAATLSQKFNVLMLERGGVPFTNPNVSYLENFHITLADVSPTSASQFFVSSDGVYNSRARILGGGSSINAGFYTRADPRFIKKVGWDINLVNQSYPWIENQIVHRPKFSAYQRAVRDSLLDSGVSPFNGFTYDHLYGTKVGGTIFDKYGRRHTAAELLASGNHEKLTVLVYATVQKIVFDTKGKKPKAVGVIFQDENGKQHEAVLANDRHSEVIMSSGAIGTPQLLMLSGIGPKEELQKLNIPVILDNHFVGKGMVDNPMNTMFVPSERPVHQSLIETVGITKMGVYIEASSGFSQSNDSIHCHHGIVSAEIGQLSTIPPKQRSPEAIKEFIKNKKDLPIEAFKGGFILSKVANPWSVGELKLVNTNVKDNPSVAFNYFSHPYDLERCVKGIRLAIKVVQSKHFTNYTLSDRKTAEELLNLTVKANVNFIPKHAQDTKSLKQFCKDTVITIWHYHGGCRVGKVVNPDYMVLGVDRLRVVDGSTFDESPGTNPQATVMMMGRYMGLKILRDRLGKLADFRHSYLETNKGTKFIH 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02962 604 ProSitePatterns GMC oxidoreductases signature 2. 289 303 IPR000172 GO:0016614|GO:0050660
Vimu11g02962 604 Gene3D - 175 521 - -
Vimu11g02962 604 PANTHER OSJNBA0019K04.7 PROTEIN 20 583 - -
Vimu11g02962 604 SUPERFAMILY FAD/NAD(P)-binding domain 49 582 IPR036188 -
Vimu11g02962 604 SUPERFAMILY FAD-linked reductases, C-terminal domain 326 528 - -
Vimu11g02962 604 Pfam GMC oxidoreductase 58 150 IPR000172 GO:0016614|GO:0050660
Vimu11g02962 604 Pfam GMC oxidoreductase 218 330 IPR000172 GO:0016614|GO:0050660
Vimu11g02962 604 Pfam GMC oxidoreductase 426 572 IPR007867 GO:0016614
Vimu11g02962 604 PIRSF Alcohol_oxidase 38 589 IPR012132 GO:0050660
Vimu11g02962 604 Gene3D - 58 571 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02962 Vimu-Chr11 49314951 49320611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02962 12 582 Miscellaneous Gene Families AT5G51950 49.573 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02962 K15403 - gmx:100788704 1063.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00325 4 2382721 2387868 Vimu11g02962 11 49314951 49320611 PCT