Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00319 ATGTGGAGCGTGGTGCTGCTTCTTGTTTGTTCTCTCATTGGTTCTGCTGAGGCCTCAGTGTCGTATGACTCAAAGGCTATCACCATTAATGGCCAGAGAAGAATCCTCATTTCTGGATCCATTCATTACCCAAGGAGCACCCCTGAGATGTGGCCAGATCTTATTCAGAAGGCCAAGGAGGGAGGGTTGGACGTGATTCAGACTTATGTTTTCTGGAATGGGCACGAGCCTTCACCTGGCAAGTATTATTTTGAGGGGAACTATGACCTGGTGAAGTTCATAAAGCTGGTGCAGCAAGCGGGCCTTTATGTTCATCTCAGGATTGGTCCTTATGTCTGTGCTGAGTGGAACTTTGGGGGTTTCCCTGTTTGGCTAAAGTACATTCCAGGAATCAGCTTCAGAACAGACAATGAACCTTTTAAGAATCAAATGCAAAAGTTTACCACGAAGATTGTTGATTTGATGAAAGCGGAGAGGTTATACGAGTCTCAGGGAGGTCCAATAATTATGTCACAGATTGAAAATGAATATGGACCTGTAGAGTATGAAATTGGTGCTGCGGGTAAATCTTATACTAAATGGGCAGCAGAGATGGCTATGGGACTTGGTACTGGGGTTCCATGGATCATGTGCAAGCAGGATGATACTCCTGATCCTCTTATTAACACTTGCAATGGCTTCTACTGTGATTATTTCTCTCCAAATAAGGCTTACAAGCCAAAGATGTGGACAGAAGCTTGGACTGGCTGGTTTACGGAGTTTGGAGGTCCAGTTCCTCATCGACCTGCTGAAGACTTAGCATTTTCAGTTGCAAGGTTTCTACAGAAAGGAGGATCATTTGTAAACTATTACATGTATCATGGGGGAACAAACTTCGGTCGAACTGCCGGTGGTCCCTTTATTGCAACAAGCTATGATTATGATGCACCACTTGATGAATATGGACTGCTCAGGCAACCAAAGTGGGGTCATCTGAAGGATTTACACAGAGCAATAAAAATGTGTGAACCAGCCTTAGTATCAGGAGATCCTACTGTGACAAATCTTGGAAACTATCAAGAGGCTCATGTGTTTAAAGCAAAGTCAGGAGCTTGTGCTGCATTCCTTGCAAACTATAACCCAAAATCTTATGCAACAGTGGCCTTTGGAAGTATGCATTACAACTTGCCTCCTTGGTCTATAAGCATTCTTCCTGACTGCAAGCACACTATTTATAACACTGCAAGGGTTGGTTCTCAGAGTGCCCAGATGAAGATGACTGGTGTTCCTATTCATGGCGGACTCTCTTGGCTATCATTCAATGAAGAAACTACTACTACTGAGGATAGTTCCTTCACCATGACTGGCCTGTTAGAGCAGTTAAATACAACAAGAGATTTATCTGACTACTTGTGGTACTCTACAGATGTTGTGCTTGATTCCAGTGAAGGGTTTCTGACAAACGGAAAGGATCCTATTCTTACTGTGTTTTCAGCTGGGCATGCTTTGCATGTTTTTATAAATGGTCAACTATCAGGTGAGGAGCATAATAATGTTGGACCTCATTTTGAAACATGGAATGCTGGTGTTCTTGGCCCAATATCATTAAGTGGTCTCAATGAAGGGAGAAGGGACTTGTCTTGGCAGAAATGGTCTTACAAGGTTGGTCTTAAAGGTGAAACCTTGAGTCTCCATTCTATCAGTGGAAGTTCCTCAGTGGAGTGGATTGAGGGATCTTTATTTTCTAGAAGACAGCCTTTGACTTGGTACAAAACAACTTTCGATGCACCAGCTGGCACTGCACCATTGGCTTTAGACATGGGGAGCATGGGTAAGGGTCAAGTGTGGTTAAATGGACAGAATCTTGGCCGCTACTGGCCTGCTTATAAGGCTTCTGGTACCTGTGATTATTGTGACTATGCTGGAACTTACAATGAGAATAAATGCAGAAGCAACTGTGGCGAGGCCTCTCAAAGATGGTATCATGTTCCTCAGTCATGGCTAAAGCCCACAGGAAATTTATTGGTTGTGTTTGAAGAGCTAGGTGGAGATCCCAATGGAATCTTTTTGGTTAGAAGGGATATAGATAGTGTGTGTGCTGATATTTATGAGTGGCAGCCTAATCTTATAAGCTATCAGATGCAAGTTGCTGGCAAACCACCTGTGAGACCAAAAGTTCATTTATCATGTAGCCCTGGACAGAAAATCTCATCCATCAAATTTGCTAGCTTTGGTACTCCACTGGGTTCTTGTGGAAACTTCCATGAAGGAAGCTGTCATGCTCACAAGTCTTATGATGCATTTCAAAGGGATTCTTTGTTGTTGCAGAATTGTGTTGGACAAAACTGGTGTGCAGTAACAGTGTCACCTGAAAATTTTGGAGGAGATCCATGTCCAAATGTCATGAAGAAACTCTCAGTGGAAGCTATTTGTTCCTGA 2418 0.4318 MWSVVLLLVCSLIGSAEASVSYDSKAITINGQRRILISGSIHYPRSTPEMWPDLIQKAKEGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLVQQAGLYVHLRIGPYVCAEWNFGGFPVWLKYIPGISFRTDNEPFKNQMQKFTTKIVDLMKAERLYESQGGPIIMSQIENEYGPVEYEIGAAGKSYTKWAAEMAMGLGTGVPWIMCKQDDTPDPLINTCNGFYCDYFSPNKAYKPKMWTEAWTGWFTEFGGPVPHRPAEDLAFSVARFLQKGGSFVNYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKMCEPALVSGDPTVTNLGNYQEAHVFKAKSGACAAFLANYNPKSYATVAFGSMHYNLPPWSISILPDCKHTIYNTARVGSQSAQMKMTGVPIHGGLSWLSFNEETTTTEDSSFTMTGLLEQLNTTRDLSDYLWYSTDVVLDSSEGFLTNGKDPILTVFSAGHALHVFINGQLSGEEHNNVGPHFETWNAGVLGPISLSGLNEGRRDLSWQKWSYKVGLKGETLSLHSISGSSSVEWIEGSLFSRRQPLTWYKTTFDAPAGTAPLALDMGSMGKGQVWLNGQNLGRYWPAYKASGTCDYCDYAGTYNENKCRSNCGEASQRWYHVPQSWLKPTGNLLVVFEELGGDPNGIFLVRRDIDSVCADIYEWQPNLISYQMQVAGKPPVRPKVHLSCSPGQKISSIKFASFGTPLGSCGNFHEGSCHAHKSYDAFQRDSLLLQNCVGQNWCAVTVSPENFGGDPCPNVMKKLSVEAICS 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00319 805 ProSiteProfiles SUEL-type lectin domain profile. 713 805 IPR000922 GO:0030246
Vimu4g00319 805 FunFam Beta-galactosidase 709 805 - -
Vimu4g00319 805 FunFam Beta-galactosidase 15 335 - -
Vimu4g00319 805 CDD Gal_Rha_Lectin_BGal 716 804 - -
Vimu4g00319 805 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 165 177 IPR019801 GO:0004553|GO:0005975
Vimu4g00319 805 Pfam Beta-sandwich domain in beta galactosidase 339 410 IPR041392 -
Vimu4g00319 805 Gene3D - 558 692 - -
Vimu4g00319 805 FunFam Beta-galactosidase 284 412 - -
Vimu4g00319 805 PANTHER BETA-GALACTOSIDASE RELATED 10 702 IPR001944 GO:0004553|GO:0005975
Vimu4g00319 805 Gene3D - 715 805 IPR043159 -
Vimu4g00319 805 Gene3D Glycosidases 16 336 - -
Vimu4g00319 805 SUPERFAMILY (Trans)glycosidases 20 336 IPR017853 -
Vimu4g00319 805 Pfam Galactose binding lectin domain 721 804 IPR000922 GO:0030246
Vimu4g00319 805 Pfam Glycosyl hydrolases family 35 27 331 IPR031330 -
Vimu4g00319 805 SUPERFAMILY Galactose-binding domain-like 542 704 IPR008979 -
Vimu4g00319 805 FunFam Beta-galactosidase 551 692 - -
Vimu4g00319 805 SUPERFAMILY Galactose-binding domain-like 394 533 IPR008979 -
Vimu4g00319 805 PRINTS Glycosyl hydrolase family 35 signature 30 47 IPR001944 GO:0004553|GO:0005975
Vimu4g00319 805 PRINTS Glycosyl hydrolase family 35 signature 578 592 IPR001944 GO:0004553|GO:0005975
Vimu4g00319 805 PRINTS Glycosyl hydrolase family 35 signature 605 621 IPR001944 GO:0004553|GO:0005975
Vimu4g00319 805 PRINTS Glycosyl hydrolase family 35 signature 299 315 IPR001944 GO:0004553|GO:0005975
Vimu4g00319 805 PRINTS Glycosyl hydrolase family 35 signature 279 294 IPR001944 GO:0004553|GO:0005975
Vimu4g00319 805 PRINTS Glycosyl hydrolase family 35 signature 163 178 IPR001944 GO:0004553|GO:0005975
Vimu4g00319 805 PRINTS Glycosyl hydrolase family 35 signature 106 125 IPR001944 GO:0004553|GO:0005975
Vimu4g00319 805 PRINTS Glycosyl hydrolase family 35 signature 51 69 IPR001944 GO:0004553|GO:0005975
Vimu4g00319 805 PRINTS Glycosyl hydrolase family 35 signature 242 257 IPR001944 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00319 Vimu-Chr4 2345447 2350786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00319 5 805 Glycoside Hydrolase AT3G13750 76.048 0.0 1344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00319 - - gmx:100811187 1590.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00319 4 2345447 2350786 Vimu4g00319 4 2345447 2350786 ECH
Vimu4g00319 4 2345447 2350786 Vimu11g02957 11 49277785 49283499 PCT