Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02957 ATGAGCTTCAACAAGCTCATTGTGTGGAATGTGCCTCTGCTCTTGGTGGTGGTGTTTGCATGGTCACTGATCGGTCATGCTTCGGCTTCTGTGTCCTATGACCATAAAGCTATCACCATCAATGGCCAAAGAAGGATACTGCTTTCTGGTTCCATTCACTACCCCAGAAGCACACCTGAGATGTGGCCAGATCTTATTCAGAAGGCAAAGGAAGGAGGTTTGGATGTGATTCAAACTTATGTTTTCTGGAATGGGCATGAGCCTTCGCCCGGCAAATATTACTTTGGGGGAAACTATGACCTGGTGAGGTTCATAAAGCTGGTGCAGCAAGCAGGCCTTTACGTTAACCTCAGAATTGGTCCTTATGTTTGTGCTGAATGGAACTTCGGAGGTTTCCCTGTTTGGCTCAAGTACATTCCAGGTATCAGCTTCAGGACAGACAATGGACCGTTTAAGTTTCAAATGGAAAGATTTACCAGGAAGATTGTGGATATGATGAAAGCAGAAAGGTTATTCGAGTCTCAGGGTGGTCCAATAATTCTATCTCAGATCGAAAATGAATATGGACCTATGGAGTATGAAGTTGGTGCTCCCGGTAGAGCCTACACACAATGGGCAGCTCATATGGCTGTAGGCCTTGGCACTGGGGTTCCATGGATCATGTGCAAGCAAGATGATGCTCCTGATCCTGTTATTAACACTTGCAATGGCTTTTATTGTGATTATTTCTCTCCAAATAAGGCTTACAAACCAAAGATGTGGACAGAGGCTTGGACTGGCTGGTTTACTGAGTTTGGAGGTGCAGTTCCTCAAAGGCCTGCTGAAGACTTGGCATTTTCAATTGCAAGGTTTATACAGAAAGGGGGATCATATGTCAACTATTATATGTATCACGGGGGAACAAATTTTGGTCGAACTGCTGGTGGTCCCTTTATTGCTACGAGCTATGATTATGATGCACCTCTTGATGAATATGGATTGGCCAGACAGCCAAAGTGGGGTCATCTGAAAGATTTACACAGAGCAATAAAACTATGTGAACCTGCTTTAATAGCAGGAGATCCTACTGTACAACGGCTTGGGAACTATGAAGAGGCTCATGTCTTTAGATCAAGGTCTGGAGCTTGTGCTGCATTCCTTGCAAACTACAATCCGCAATCTTATGCAACGGTGGCATTTGGAAATCAACATTACAATCTGCCTCCTTGGTCTATAAGCATTCTTCCTAACTGCAAGCACACTGTTTATAACACTGCAAGGGTTGGTTCTCAGAGCACAACAATGAAGATGAGTCGTGTTCCTATTCATGGAGGACTGTCTTGGAAAGCGTTTAATGAAGAGACAACAACTACTGATGATAGTTCCTTCACTGTGACTGGCCTATTGGAGCAGATAAATGCAACCAGAGATTTGTCTGACTACCTGTGGTACTCCACGGATGTTGTGATCAATCCCAATGAAGAATTTTTGAGGAATGGAAAGTATCCTTATCTTACAGTTTTATCTGCTGGGCATGCTTTGCATGTTTTTATCAACAATCAGTTGGCAGGAACTTCATATGGAAGCTTAGAGGCCCCCAAACTAACCTTTAGTGAAAGTGTGAGGCTCAGAGCTGGTGTTAACAAAATCTCCCTTTTAAGTGTTGCAGTTGGGCTTCCGAATGTTGGTCCACATTTTGAAAGATGGAATGCTGGAGTTCTTGGCCCAATAACATTAAGTGGTCTCAATGAAGGGAGAAGAGATTTAACTTGGCAAAAGTGGTCATACAAGGTTGGTCTTAAAGGTGAAGCCTTGAATCTACATTCTCTTAGTGGAAGCTCCTCTGTTGAGTGGCTTCAGGGATATTTAGTTTCTAGAAGACAGCCATTGACATGGTACAAAACTACCTTTGATGCCCCAGTTGGAGTTGCACCATTGGCTTTAGACATGGCCAGCATGGGCAAAGGTCAAGTGTGGATAAATGGACAGAGTCTGGGCCGCTACTGGCCTGCTTACAAAGCATCTGGTTCTTGTGGTTACTGTAACTATGCAGGGACTTACAATGAGAAAAAATGTGGAAGTAAATGTGGCGAGCCTTCTCAAAGATGGTACCATGTTCCTCATTCTTGGCTGAAGCCAACCGGAAATTTATTGGTCGTGTTTGAGGAATTGGGTGGGGATCCGAATGGGATCTTTTTGGTTAGAAGAGATATTGACAGTGTATGCGCTGATATCTATGAGTGGCAGCCAAATCTTGTTAGTTATGAGATGCAAGCTTCTGGCAAAGTCAAAAGTCCTGTGAGGCCAAAAGCACATTTGTCATGTGGTCCTGGACAAAAAATCTCATCAATCAAGTTTGCTAGCTTTGGAACTCCAAATTGTGTTGGGCAAAGCTGGTGCACAGTGACAGTGTCTCCTGAAATTTTTGGAGGAGATCCATGTCCAAGTGTGATGAAGAAGCTCTCAGTGGAAGCCATTTGCACCTGA 2466 0.4384 MSFNKLIVWNVPLLLVVVFAWSLIGHASASVSYDHKAITINGQRRILLSGSIHYPRSTPEMWPDLIQKAKEGGLDVIQTYVFWNGHEPSPGKYYFGGNYDLVRFIKLVQQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGISFRTDNGPFKFQMERFTRKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEVGAPGRAYTQWAAHMAVGLGTGVPWIMCKQDDAPDPVINTCNGFYCDYFSPNKAYKPKMWTEAWTGWFTEFGGAVPQRPAEDLAFSIARFIQKGGSYVNYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLARQPKWGHLKDLHRAIKLCEPALIAGDPTVQRLGNYEEAHVFRSRSGACAAFLANYNPQSYATVAFGNQHYNLPPWSISILPNCKHTVYNTARVGSQSTTMKMSRVPIHGGLSWKAFNEETTTTDDSSFTVTGLLEQINATRDLSDYLWYSTDVVINPNEEFLRNGKYPYLTVLSAGHALHVFINNQLAGTSYGSLEAPKLTFSESVRLRAGVNKISLLSVAVGLPNVGPHFERWNAGVLGPITLSGLNEGRRDLTWQKWSYKVGLKGEALNLHSLSGSSSVEWLQGYLVSRRQPLTWYKTTFDAPVGVAPLALDMASMGKGQVWINGQSLGRYWPAYKASGSCGYCNYAGTYNEKKCGSKCGEPSQRWYHVPHSWLKPTGNLLVVFEELGGDPNGIFLVRRDIDSVCADIYEWQPNLVSYEMQASGKVKSPVRPKAHLSCGPGQKISSIKFASFGTPNCVGQSWCTVTVSPEIFGGDPCPSVMKKLSVEAICT 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02957 821 CDD Gal_Rha_Lectin_BGal 758 820 - -
Vimu11g02957 821 FunFam Beta-galactosidase 449 586 - -
Vimu11g02957 821 FunFam Beta-galactosidase 295 423 - -
Vimu11g02957 821 Gene3D - 784 821 IPR043159 -
Vimu11g02957 821 PRINTS Glycosyl hydrolase family 35 signature 621 635 IPR001944 GO:0004553|GO:0005975
Vimu11g02957 821 PRINTS Glycosyl hydrolase family 35 signature 117 136 IPR001944 GO:0004553|GO:0005975
Vimu11g02957 821 PRINTS Glycosyl hydrolase family 35 signature 253 268 IPR001944 GO:0004553|GO:0005975
Vimu11g02957 821 PRINTS Glycosyl hydrolase family 35 signature 174 189 IPR001944 GO:0004553|GO:0005975
Vimu11g02957 821 PRINTS Glycosyl hydrolase family 35 signature 41 58 IPR001944 GO:0004553|GO:0005975
Vimu11g02957 821 PRINTS Glycosyl hydrolase family 35 signature 310 326 IPR001944 GO:0004553|GO:0005975
Vimu11g02957 821 PRINTS Glycosyl hydrolase family 35 signature 62 80 IPR001944 GO:0004553|GO:0005975
Vimu11g02957 821 PRINTS Glycosyl hydrolase family 35 signature 648 664 IPR001944 GO:0004553|GO:0005975
Vimu11g02957 821 PRINTS Glycosyl hydrolase family 35 signature 290 305 IPR001944 GO:0004553|GO:0005975
Vimu11g02957 821 SUPERFAMILY Galactose-binding domain-like 585 748 IPR008979 -
Vimu11g02957 821 PANTHER BETA-GALACTOSIDASE RELATED 21 745 IPR001944 GO:0004553|GO:0005975
Vimu11g02957 821 Gene3D - 600 735 - -
Vimu11g02957 821 Pfam Glycosyl hydrolases family 35 38 342 IPR031330 -
Vimu11g02957 821 FunFam Beta-galactosidase 26 346 - -
Vimu11g02957 821 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 176 188 IPR019801 GO:0004553|GO:0005975
Vimu11g02957 821 Gene3D Glycosidases 25 346 - -
Vimu11g02957 821 Pfam Beta-sandwich domain in beta galactosidase 350 421 IPR041392 -
Vimu11g02957 821 FunFam Beta-galactosidase 594 735 - -
Vimu11g02957 821 ProSiteProfiles SUEL-type lectin domain profile. 758 821 IPR000922 GO:0030246
Vimu11g02957 821 SUPERFAMILY (Trans)glycosidases 30 347 IPR017853 -
Vimu11g02957 821 SUPERFAMILY Galactose-binding domain-like 405 576 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02957 Vimu-Chr11 49277785 49283499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02957 23 820 Glycoside Hydrolase AT3G13750 77.832 0.0 1361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02957 - - gmx:100785688 1649.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02957 11 49277785 49283499 Vimu11g02957 11 49277785 49283499 ECH
Vimu4g00319 4 2345447 2350786 Vimu11g02957 11 49277785 49283499 PCT