Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00308 ATGGCTGGGATTGTGGTGGTTTTTGATTTCGATTCAACAATCATCGAGTGCGATAGTGATAACTGGGTTCTTGATGAGTTTGGTCTAACTGAAAAGTTCTATCAGTTTCTTCCTAACACGCTTTGGAACCCTCTCATGGATAAGATGATGTACGAACTTCATTCGCAAGGAAAAACCATTGAAGACATTGTACAAGTTCTGAATAGAACTCCAATGCATCCCCGCATTGTCCCAGCCATAGAAGCAGCACATTCCCTTGGGTGCGAGTTGAAGATTGTGAGCGATGCAAATAGTTTCTTTATTGAAACAATTTTGAAGCATCATGGGGTTTGGAATTGTTTCTCGGAGATCACTGCAAACCCCAGCTATGTTAATGAAGAAGGGATTCTCAGAGGATTGGTGATGGAAAGGATCCAAAATTCGGTTGATGCTGCATCAGAGAAGAAGTACATTTATCTGGGAGATGGAAATGGAGACTTCTGCCCTAGTTTGAAGCTGAAAGATAAGGACTTTTTGATGCCCAGAAGGAATTTTCCGTTGTGTGATTTAGTGTCGAAAAACTCTGATCACGTAAAAGCAGAGGTGCATGAATGGAGAAATGGGGAAGAGCTTCATGATATTATGCTCCATATTATCAAGAACAGTGTTGGTAGTTGTACTCCAACAAGATCAATCGATTGCAAGTTAGGGTCAATTTCAATTGATGTTCATAACCCTTTACCTGCAGCACTTCCAGTTCCTCAATAA 747 0.4083 MAGIVVVFDFDSTIIECDSDNWVLDEFGLTEKFYQFLPNTLWNPLMDKMMYELHSQGKTIEDIVQVLNRTPMHPRIVPAIEAAHSLGCELKIVSDANSFFIETILKHHGVWNCFSEITANPSYVNEEGILRGLVMERIQNSVDAASEKKYIYLGDGNGDFCPSLKLKDKDFLMPRRNFPLCDLVSKNSDHVKAEVHEWRNGEELHDIMLHIIKNSVGSCTPTRSIDCKLGSISIDVHNPLPAALPVPQ 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00308 248 Gene3D - 2 167 IPR023214 -
Vimu4g00308 248 NCBIfam MtnX-like HAD-IB family phosphatase 4 175 IPR006384 GO:0016791
Vimu4g00308 248 Pfam Putative Phosphatase 4 212 IPR016965 GO:0016791
Vimu4g00308 248 PANTHER PHOSPHATASE, ORPHAN 1, 2 132 213 IPR016965 GO:0016791
Vimu4g00308 248 NCBIfam HAD-IB family phosphatase 5 164 - -
Vimu4g00308 248 SUPERFAMILY HAD-like 5 163 IPR036412 -
Vimu4g00308 248 PIRSF PLP_phosphatas_PHOSPHO2 129 216 IPR016965 GO:0016791
Vimu4g00308 248 PIRSF PLP_phosphatas_PHOSPHO2 1 133 IPR016965 GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00308 Vimu-Chr4 2279223 2280956 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00308 K13248 - gmx:100789743 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00308 4 2279223 2280956 Vimu11g02935 11 49113386 49115456 PCT