Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00304 ATGAACGGAAGCGATGAGGTCGTGCCAGCTCCGGCGGGTCCACCGCATCCTCTGGACTGGAAATTCTCGCAGGTCTTCGGCGAACGCACGGCAGGGGAAGAGGTTCAGGAAGTGGACATAATTTCTGCTATTGAATTTGACAAGTCTGGTGATCACCTTGCTACTGGTGATCGGGGTGGTCGGGTGGTTCTCTTTGAGAGAACAGATACAAAAGATCATGGTGCATCAAGAAGGGATTTGGAGAGGATGGACTATTCTATCAGTAGGCATCCTGAGTTCCGGTACAAAACAGAGTTTCAGAGCCACGAACCTGAGTTTGACTATCTTAAGAGTTTGGAGATTGAAGAAAAGATCAACAAAATCAGATGGTGCCTAACAGCTAATGGGGCTCTCTTCCTTCTCTCTACAAATGATAAGACTATCAAATTTTGGAAGGTCAGCACTGAAGAAGCACTTCAGCAGTCTCGTGAGCAGTGTTACGCACTACTTTCACGGCAGCTGGTGTTACCTGCAATTCCATCTCTTCTGATAACATATAAGAGGCCTAACATACCCCACGTTCAAGAAAAGAAGGTAAAAAAAATTTCTGAGATGAATATCGACCTTTCAAAATCAATGGGGAATGGATGTATTGCTAGTTCAAGCAATTCAAGTAGCTCTAGGCCATATCTTGCAAATGGAGGATCTCCGGATAGATCTTACAATTATATAAGCAATGACTTTTCATTTCCACCAGGAGGCATACCTTCACTGAGATTACCCATGGTAGTTGGTCAAAGCTCGGCGTTGCTTGCTTTTCCTATGAATGCAGTTATTGTTTTGAGGTTAAAACAGGCTGGAAAAAATAGGTTGAACTTGCAAGACTTGGTAAGTAGCCATGAAAGCAGCTTAGTTGCTCGATGTCGTAGAGTGTATGCACATGCGCATGATTATCATATCAATTCTATTTCAAATAACAGTGATGGCGAAACTTTCATATCTGCCGATGATTTGCGAATAAACCTTTGGAACCTGGAAATTAGCTCTCAAAGTTTTAATATTGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACAGAGGTTATAACATCAGCAGAATTTCACCCTACACATTGCAATATGTTGGCCTATAGCAGTTCAAAGGGTTCAATCCGACTTGTTGACTTGAGACAATCGGCATTATGTGATTCTCATTCCAAACTATTTGAGGAACAGGAAGCCCCAGGGTCAAGATCATTTTTCACAGAGATTATTGCTTCTATATCAGACATAAAATTTGGGAAGGATGGAAGATACATACTTAGTCGTGATTACATGACTTTAAAGTTATGGGACATTAATATGGATTCAGGCCCCGTTGCAACTTTCCAAGTTCACGAGTATTTAAGACCCAAGCTTTGTGATTTATACGAAAATGATTCAATTTTTGACAAGTTCGAGTGTTGTCTGAGTGGTGATGGATTGCGTGTAGCCACTGGTTCTTACAGCAATCTCTTCCGTGTGTTTGGTTGTGCCCCTGGAAGTGCTGAGGCGACAACCCTAGAAGCCAGTAAAAACCCAATGAGACGACAAGTTCCAACCCCTTCAAGGCCTTCTAGATCACTGGGAAATAGTTTAACACGTGTTGTAAGACGAGGAGCAGAAGCCCCTGGTGTGGATGCTAATGGGAATTCTTTTGACTTCACAACAAAGTTGCTGCACTTAGCATGGCATCCGAGTGAGAATTCAATTGCTTGTGCTGCTGCAAATAGCTTGTACATGTACTATGCGTAA 1773 0.4247 MNGSDEVVPAPAGPPHPLDWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGASRRDLERMDYSISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCLTANGALFLLSTNDKTIKFWKVSTEEALQQSREQCYALLSRQLVLPAIPSLLITYKRPNIPHVQEKKVKKISEMNIDLSKSMGNGCIASSSNSSSSRPYLANGGSPDRSYNYISNDFSFPPGGIPSLRLPMVVGQSSALLAFPMNAVIVLRLKQAGKNRLNLQDLVSSHESSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISSQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLVDLRQSALCDSHSKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSAEATTLEASKNPMRRQVPTPSRPSRSLGNSLTRVVRRGAEAPGVDANGNSFDFTTKLLHLAWHPSENSIACAAANSLYMYYA 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00304 590 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 283 586 - -
Vimu4g00304 590 Gene3D - 36 243 IPR015943 GO:0005515
Vimu4g00304 590 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Vimu4g00304 590 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Vimu4g00304 590 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 559 588 IPR000009 GO:0000159|GO:0019888
Vimu4g00304 590 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Vimu4g00304 590 SUPERFAMILY WD40 repeat-like 39 582 IPR036322 GO:0005515
Vimu4g00304 590 Gene3D - 267 588 IPR015943 GO:0005515
Vimu4g00304 590 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Vimu4g00304 590 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 15 590 IPR000009 GO:0000159|GO:0019888
Vimu4g00304 590 SMART WD40_4 105 145 IPR001680 GO:0005515
Vimu4g00304 590 SMART WD40_4 298 337 IPR001680 GO:0005515
Vimu4g00304 590 SMART WD40_4 449 503 IPR001680 GO:0005515
Vimu4g00304 590 SMART WD40_4 407 445 IPR001680 GO:0005515
Vimu4g00304 590 SMART WD40_4 348 388 IPR001680 GO:0005515
Vimu4g00304 590 SMART WD40_4 31 66 IPR001680 GO:0005515
Vimu4g00304 590 MobiDBLite consensus disorder prediction 518 537 - -
Vimu4g00304 590 PIRSF PPA2_B55 12 590 IPR000009 GO:0000159|GO:0019888
Vimu4g00304 590 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 36 159 - -
Vimu4g00304 590 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 307 321 IPR018067 -
Vimu4g00304 590 Pfam WD domain, G-beta repeat 301 337 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00304 Vimu-Chr4 2251963 2259518 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00304 K04354 - gmx:100799449 968.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02932 11 49087355 49096190 Vimu4g00304 4 2251963 2259518 ECH
Vimu4g00304 4 2251963 2259518 Vimu4g00304 4 2251963 2259518 ECH
Vimu4g00304 4 2251963 2259518 Vimu11g02932 11 49087355 49096190 PCT