Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02932 ATGAACGGTGGTGATGAGGTCGTGGCAGCTCCGGCGGGTCCACCGCAGCCGCTGGAGTGGAAATTCTCTCAGGTTTTCGGGGAACGTACGGCGGGGGAGGAAGTTCAGGAAGGTAATTGTTCCTACGTTGCTTTGTCGGATCCAGTTGTTGATGTGTTGGGATTAGGGTTTGGTTCCTTGCTTTCGATCTGTTTCGGATCATGTTTCGTTGCTCCCTTGTTGTTTTGGATTCTGGGTCATTGCCTAATCGTTGGTATTTTTATTGCTGCAACTGATAACCTATATGGTTTGGAAACATTGTCCCTCAGTGCCTGCCTTTTGGCCATATCACAGAGCTTTGTTCTTATGGACATTATTTCTGCTATTGAGTTTGATAAGTCTGGTGATCATCTTGCTACCGGTGACCGTGGTGGCCGAGTAGTTCTCTTTGAGAGAACAGATACAAAAGATCATCGTGGATCAAGAAGGGATTTGGAGAGGATGGACTATTCTATTAGTAGACATCCCGAGTTCCGTTATAAAACAGAGTTTCAGAGTCATGAACCTGAGTTTGACTATCTTAAGAGCTTGGAAATAGAAGAGAAAATTAACAAAATCAAATGGTGTCAAACCGCCAATGGTGCCTTATTCCTTCTATCTACAAATGATAAAACCATCAAATATTGGAAGGTTCAAGAAAAGAAGGTCAAGAAAATTTCTGACATGAACGTTGATCCTAAAGCAATGGGAAATGGCTCTATTGCGAGTTCAAGTAGTTCCAGTAGCTCTAGATCATTTCTTGCAAATGGAGTATCTCCAGATGGACCATACAATTATTTAAGCAACGATTTCTCATTTCCACCAGGAGGAATACCTTCACTAAGATTACCATTGGTAGTTGTGTTCAGCCCTTCCAGTGTATTTATTGTTTACCAATATTTATTTCTTGGGGATAAGAAATTATGGATGGCAGTGGAGGGCGGGATTCTAAAGGGAGGGGACAAGAGGGTAACCAGCCATGAGACGAGTTTGATGGCTCGATGCCGAAGAGTATATGCCCACGCACATGATTATCATATTAATTCTATTTCAAATAACAGCGATGGCGAAACTTTCATATCAGCTGATGATTTACGAATAAATCTTTGGAATTTGGAAATTAGCAATCAAAGTTTTAATATCGTTGATGTAAAGCCTGCAAATATGGAGGATCTGACTGAGGTTATAACATCAGCAGAATTTCACCCTACACATTGTAATACATTGGCATATAGCAGTTCAAAGGGTTCAATTCGTCTTGTTGACTTGCGGCAGTCAGCATTATGTGATTCTCATGCCAAACTATTTGAGGAACAGGAGGCCCCTGGATCCCGATCATTTTTCACAGAGATTATTGCTTCTATCTCGGACATAAAATTTGGAAAGGATGGAAGATATATACTTAGTCGTGATTACATGACCCTAAAGTTATGGGACATCAATATGGATTCTGGCCCAGTTGCTACATTCCAGGTTCACGAGTATTTAAGGCCAAAGCTCTGTGATTTATATGAAAATGATTCAATTTTTGATAAGTTTGAGTGTTGTCTAAGTGGTGATGGATTGCGAGTTTCAACTGGCTCTTACAGCAATCTATTCCGTGTGTTTGGTTGTGTTCCTGGAAGTACCGAGGCTACAACTTTGGAAGCCAGTAAAAATCCAATGAGACGTCAAGTTCCAACCCCATCAAGGCCTTCTAGATCACTGGGAAACAGTATAACAAGAGTTGTAAGACGTGGAGCAGAAAGCACTGGAGTTGATGCAAATGGGAATTCTTTTGATTTCACAACAAAGTTGCTGCACTTAGCATGGCACCCAACTGAGAATTCAATTGCTTGTGCTGCTGCAAATAGCTTATACATGCTTCTTTACCCTTCTTACCAAAACCATAGAGTTGGAGGCTACATTAACACACACTACAAGTGCCCTTCAAAATCTTTAGCAGGAGCTTTTAGAAAAAGATCCAGAAGTGGCTGTTTCAAAATTCCTGGAAGAAAATGTGATTGTAGCTCTCCTACAACAAATACTAAAGGATGTTCAATATCTGCCACTAGGATAAAAGATAAAATGTAG 2091 0.4079 MNGGDEVVAAPAGPPQPLEWKFSQVFGERTAGEEVQEGNCSYVALSDPVVDVLGLGFGSLLSICFGSCFVAPLLFWILGHCLIVGIFIAATDNLYGLETLSLSACLLAISQSFVLMDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHRGSRRDLERMDYSISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANGALFLLSTNDKTIKYWKVQEKKVKKISDMNVDPKAMGNGSIASSSSSSSSRSFLANGVSPDGPYNYLSNDFSFPPGGIPSLRLPLVVVFSPSSVFIVYQYLFLGDKKLWMAVEGGILKGGDKRVTSHETSLMARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVSTGSYSNLFRVFGCVPGSTEATTLEASKNPMRRQVPTPSRPSRSLGNSITRVVRRGAESTGVDANGNSFDFTTKLLHLAWHPTENSIACAAANSLYMLLYPSYQNHRVGGYINTHYKCPSKSLAGAFRKRSRSGCFKIPGRKCDCSSPTTNTKGCSISATRIKDKM 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02932 696 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 115 274 - -
Vimu11g02932 696 Gene3D - 116 278 IPR015943 GO:0005515
Vimu11g02932 696 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 326 626 - -
Vimu11g02932 696 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 199 227 IPR000009 GO:0000159|GO:0019888
Vimu11g02932 696 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 123 143 IPR000009 GO:0000159|GO:0019888
Vimu11g02932 696 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 599 628 IPR000009 GO:0000159|GO:0019888
Vimu11g02932 696 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 170 198 IPR000009 GO:0000159|GO:0019888
Vimu11g02932 696 SMART WD40_4 108 144 IPR001680 GO:0005515
Vimu11g02932 696 SMART WD40_4 183 223 IPR001680 GO:0005515
Vimu11g02932 696 SMART WD40_4 388 428 IPR001680 GO:0005515
Vimu11g02932 696 SMART WD40_4 338 377 IPR001680 GO:0005515
Vimu11g02932 696 SMART WD40_4 447 485 IPR001680 GO:0005515
Vimu11g02932 696 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 347 361 IPR018067 -
Vimu11g02932 696 SUPERFAMILY WD40 repeat-like 117 622 IPR036322 GO:0005515
Vimu11g02932 696 Gene3D - 310 633 IPR015943 GO:0005515
Vimu11g02932 696 Pfam WD domain, G-beta repeat 341 377 IPR001680 GO:0005515
Vimu11g02932 696 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 15 628 IPR000009 GO:0000159|GO:0019888
Vimu11g02932 696 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 183 197 IPR018067 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02932 Vimu-Chr11 49087355 49096190 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02932 K04354 - gmx:100786941 884.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02932 11 49087355 49096190 Vimu4g00304 4 2251963 2259518 ECH
Vimu11g02932 11 49087355 49096190 Vimu11g02932 11 49087355 49096190 ECH
Vimu4g00304 4 2251963 2259518 Vimu11g02932 11 49087355 49096190 PCT