Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00283 ATGGATGAAAGGTCAAGAAACGAGGTATCTCCTCAGCTGTTAGATTTGATCCCAAACGAGCGAGAGTGGCAGATGAACAGAAACGAAGGAAAGTCCTCAGAGGAGAGAAAGCTCGAACTGAGGCTAGGTCCACCTGGTGAGGACTGGTCTCTCGGTGGTAAAATGAAGAACGCCAACTCAGAAAGAGAAGAGTCACTTCTCTCTCTTGGGTGCTTCCCTTCTTCCAACATGTCTCATGCAATACTCAGCCCCAACAATGGGTTCCAAAGCAAGGCTTCTCCATGGCCAAACTACCACAACAAGAGTAACAACAAAGCCTCTTCACCTTTTCTTCAGTTCCCACCAGCTGCACCCGTGATGGGAAAAGATGCTTCACAAAACTGCTGCCCTAAGGTGGTAGAGTTGCAGAATGGTTGTGGTGGTGGTGATAGCAGAGTGTTCTCTCCCTCTCCTGCAAATACAGCTGTGTCCCAGCCCAACACCTCTCAGAAAAGAACTGCTCCCGCTCCAGTGGTGGGGTGGCCCCCAATTCGTTCCTTCAGGAAGAACCTTGCAAGCAGCAGTGCTTCTAAGCCATCAACTGAGTCACAGCCTGAGCAGCACAACAAGGTCGCTGGTAAAAAACCTGTTGATAACTATGGTGGTAAAGGTTTGTTTGTTAAGATCAACATGGATGGAGTTCCAATAGGGAGAAAAGTGGACCTCAATGCTTATGACAGCTATGAAAATCTCTCTTCTGCTGTGGACGAGCTTTTCAGAGGTCTTCTTGCTGGTAATTTTTGTGACAATAATTCAATGCTTGTGCACATGCGTTTTGTTTTTCCACGCTTTTCTACAATTCCTGATTGTGAAGAGGGAAGCTTTGTGAAGTTATCTCATTTTGTCTTTTCCTACTGCTGTTTAGCTCAAAGAGATTCCTCTGCTGGTGGAGTTCACAACAAGCAGGATGAAGAGAAAGCAATCACGGGTTTATTGGATGGAAGTGGAGAGTATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCAGTAA 1056 0.4631 MDERSRNEVSPQLLDLIPNEREWQMNRNEGKSSEERKLELRLGPPGEDWSLGGKMKNANSEREESLLSLGCFPSSNMSHAILSPNNGFQSKASPWPNYHNKSNNKASSPFLQFPPAAPVMGKDASQNCCPKVVELQNGCGGGDSRVFSPSPANTAVSQPNTSQKRTAPAPVVGWPPIRSFRKNLASSSASKPSTESQPEQHNKVAGKKPVDNYGGKGLFVKINMDGVPIGRKVDLNAYDSYENLSSAVDELFRGLLAGNFCDNNSMLVHMRFVFPRFSTIPDCEEGSFVKLSHFVFSYCCLAQRDSSAGGVHNKQDEEKAITGLLDGSGEYTLVYEDNEGDRMLVGDVPWQ 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00283 351 MobiDBLite consensus disorder prediction 1 58 - -
Vimu4g00283 351 Pfam AUX/IAA family 38 262 IPR033389 -
Vimu4g00283 351 Pfam AUX/IAA family 296 351 IPR033389 -
Vimu4g00283 351 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 35 350 IPR003311 GO:0005634|GO:0006355
Vimu4g00283 351 ProSiteProfiles PB1 domain profile. 217 351 IPR000270 GO:0005515
Vimu4g00283 351 MobiDBLite consensus disorder prediction 147 167 - -
Vimu4g00283 351 MobiDBLite consensus disorder prediction 22 43 - -
Vimu4g00283 351 MobiDBLite consensus disorder prediction 181 200 - -
Vimu4g00283 351 MobiDBLite consensus disorder prediction 144 210 - -
Vimu4g00283 351 MobiDBLite consensus disorder prediction 90 110 - -
Vimu4g00283 351 Gene3D - 213 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00283 Vimu-Chr4 1949697 1951708 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vimu4g00283 AUX_IAA 6e-40 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00283 K14484 - gmx:100804593 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02892 11 48773058 48775734 Vimu4g00283 4 1949697 1951708 ECH
Vimu4g00283 4 1949697 1951708 Vimu4g00283 4 1949697 1951708 ECH
Vimu4g00283 4 1949697 1951708 Vimu11g02892 11 48773058 48775734 PCT