Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02892 ATGGACGATTCAGTGAATGCTCGTAAGTTTTCATCATCTTCTATATTGTCTACCAGTGAATGGTGTGGTGATATTTGTCTTGGATTTGGTCTCTTAATACGTGGCATGGTTCTCATGGATTCTTGTGACAGGCAAAGAAAGGAAGAACACAATATTGCAAGCAAGATGTGGCAAAGAAGCCACGGGTCTTCGGAGGAGAGGAAACTGGAGCTTAGGCTTGGTCCACCTAGTGAAGATTCTCTCAATGAAAGCGTCAAAAAATGCATCACAGAAAGAAACGAATCACCACTTTCTCTTGGTTACATCTCAACTCATGAAATTTCCGCTTCTGACAAACCAGGTCCAGGTGGGGCTATGGTGCCCACTGCATGGAGTTCCGCATCTTACCACCAACACCAAGCTAAACCATCATTTTTTCAACTCCAATCAAGGCCACAAAACGTGTTAATGATGAGAAAGGAAGTGCCACAACTTTGTTGTGTAGAGAACAAGGCATTCTCCCCCTCTTCTGCAGATGCAGCCGTGTCCACAAGTGATATAAGAGTCAATGGTTTGTCTTGGTGTCTGGCTAAGACGAGTATTCTGATCTCTATATCGAAAGTCTTCATTTTCACTGTTCATGTTGCTAAACTTTTTGCGTATGGACCCACCAAAAGCAGAACTGTTTCGGGTCCAGTAGTGGGTTGGCCTCCAATTCGTTCCTTCAGGAAGAACATTGCAAGTGGAAGCTCTTCAAAGCTGCATACTGGGTCCCAACAATATCAACACTTTGTTCCAGACAACGTTGCTAGCCAAAAACCTACTCACAACTGTGGCAAAGGCTTGTTTGTGAAGATCAATATGGATGGTGTTCCTATAGGAAGAAAACTGAACATCAATGCTTATGACAGCTATGAAAAACTTTCCTCTGGTGTTGATGAGCTCTTTAGAGGCCTGCTTGCAGAGATGAAGTTATCTCATATTTCCTCTTCCCACTGTTGTTCTGCACAAAGACATTCCTGTGCTGGTGGAATTGAAAACAAGGGAGAGGAAGAGAAAGAGAAAGCCAATACAAGTTTTCTGGTTGGAAGTGGAGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAAAATGCTTGTTGGAGATGTACCTTGGCATGAAGAGGCTGAGGGTGTTGAAAAGTTCTGA 1170 0.4299 MDDSVNARKFSSSSILSTSEWCGDICLGFGLLIRGMVLMDSCDRQRKEEHNIASKMWQRSHGSSEERKLELRLGPPSEDSLNESVKKCITERNESPLSLGYISTHEISASDKPGPGGAMVPTAWSSASYHQHQAKPSFFQLQSRPQNVLMMRKEVPQLCCVENKAFSPSSADAAVSTSDIRVNGLSWCLAKTSILISISKVFIFTVHVAKLFAYGPTKSRTVSGPVVGWPPIRSFRKNIASGSSSKLHTGSQQYQHFVPDNVASQKPTHNCGKGLFVKINMDGVPIGRKLNINAYDSYEKLSSGVDELFRGLLAEMKLSHISSSHCCSAQRHSCAGGIENKGEEEKEKANTSFLVGSGEYTLVYEDNEGDKMLVGDVPWHEEAEGVEKF 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02892 389 ProSiteProfiles PB1 domain profile. 274 389 IPR000270 GO:0005515
Vimu11g02892 389 Gene3D - 270 389 - -
Vimu11g02892 389 Pfam AUX/IAA family 69 380 IPR033389 -
Vimu11g02892 389 SUPERFAMILY CAD & PB1 domains 267 381 - -
Vimu11g02892 389 MobiDBLite consensus disorder prediction 55 74 - -
Vimu11g02892 389 MobiDBLite consensus disorder prediction 55 78 - -
Vimu11g02892 389 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 379 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02892 Vimu-Chr11 48773058 48775734 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vimu11g02892 AUX_IAA 4.8e-48 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02892 K14484 - gmx:100793822 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02892 11 48773058 48775734 Vimu4g00283 4 1949697 1951708 ECH
Vimu11g02892 11 48773058 48775734 Vimu11g02892 11 48773058 48775734 ECH
Vimu4g00283 4 1949697 1951708 Vimu11g02892 11 48773058 48775734 PCT