Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00210 TTGCAGCCTCTCAGACTCGAAATCAAGCGAAAGCTTGCGCAAAGATCAGAAAGAGTAAAATGTGTGGATCTACATCCAACAGAACCATGGATTCTAGCGAGTTTATACTCTGGAACTGTCTGTATCTGGAACTACCAATCTCAGACCATGGCCAAATCTTTTGAGGTTACCGAGTTACCAGTTAGATCTGCCAAGTTTATTGCTCGAAGACAATGGGTTGTTGCCGGAGCCGATGATATGTTTATTCGTGTATATAATTATAACACGATGGATAAGGTCAAAGTATTTGAAGCACATACTGATTACATTAGGTGTGTGGCAGTTCATCCCACCCTTCCTTATGTGCTTTCGTCATCTGATGATATGCTCATAAAACTCTGGGATTGGGAAAAAGGCTGGGTCTGTACCCAAATATTTGAAGGCCATTCTCATTATGTCATGCAAGTCACATTTAATCCCAAAGACACAAACACCTTTGCCAGTGCATCTCTTGATCGGACCATAAAGATTTGGAACCTTGGCTCACCTGACCCTAATTTTACATTGGATGCGCATCAGAAAGGAGTAAATTGTGTTGATTATTTTACAGGTGGTGACAAACCATATCTAATCACTGGTTCTGACGATCACACTGCCAAGGTATGGGATTATCAGACCAAAGGTTGTGTCCAGACCCTAGAAGGTCACACACACAATGTATCTGCTGTATGCTTCCATCCTGAACTTCCTATAATCATTACTGGTTCTGAAGATGGTACAGTACGCATATGGCACTCCACAACTTATAGGCTGGAAAACACATTGAACTATGGCCTTGAAAGAGTCTGGGCTATTGGATACTTGAAGGGTTCACGTCGAGTTGTGATTGGCTATGATGAAGGAACAATTATGGTCAAACTTGGTCGAGAGGTACCTGTGGCTAGCATGGACAACAGCGGGAAAATTATTTGGGCTAAGCATAATGAAATTCAGACTGTCAATATCAAAAGTGTAGGAGCAGATGTTGAGATTGCTGACGGAGAAAGGTTACCTTTAGCTGTTAAGGAGTTGGGCACATGTGATCTCTATCCCCAAAATTTAAAGCACAATCCAAATGGGAGGTTTGTTGTTGTATGTGGAGATGGTGAGTATATTATATACACTGCACTGGCTTGGAGAAATAGGTCATTTGGTTCAGCACTGGAATTTGTTTGGTCTTTTGAGGGAGAGTATGCTGTCAGAGAGAGTACATCAAAGATTAAAATCTTTAGCAAAAATTTCCAGGAAAAGAGGAGTGTCCGACCAACATTTTCAGCTGAAAGAATATTTGGTGGCGCTTTATTGGCAATGTGCTCCAACGACTTCATCTGCTTTTATGATTGGGCTGAATGCAGGTTGATATATCGCATTGATGTCAATGTGAAAAACCTCTACTGGGCTGACAGTGGTGATCTAGTGACGATTGCTAGTGATACATCATTCTACATTCTGAAGTACAATCGTGATGTTGTTATGTCACATTTAGACAGTGGAAAACCGGTAGACGAGGAAGGTGTTGAAGATGCTTTTGAACTCTTACATGAAATGAATGAGCGTGTTAGGACAGGCATCTGGGTTGGGGATTGCTTTATCTACAACAATTCCTCTTGGAGACTTAACTACTGCGTTGGTGGTGAGGTTACTACAATGTTTCATTTGGATCGCCCTATGTACTTGTTGGGATATCTTGCAAATCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAATGTTATGGGATACACACTGCTTTTAAGCTTGATTGAGTACAAGACACTCGTGATGCGTGGTGATTTGGAAAGGGCCAATGAAATTCTACCATCAATCCCTAAAGAGCATCATAACAGTGTGGCTCACTTTCTGGAATCACGAGGGATGATAGAAGATGCTCTCGAAGTAGCCACTGACCCTGACTACAGATTTGATCTAGCGATACGTCTTGGAAAGCTAGATGTTGCAAAGAGTATTGCAATAGAATTGCAGAGCGAGTCTAAATGGAAACAGTTGGGAGAATTAGCTATGTCTACTGGAAAGTTAGAAATGGCTGAGGAATGTTTGCAACATGCAATGGATTTGAGTGGTTTGTTACTCCTATATTCTTCTCTAGGAGATGCTGAAGGAATATCGAAACTTGCATCCCTTGCTAAGGAACAAGGGAAAAACAATGTTGCATTCCTATGCTTATTTATGTTGGGTAAATTAGAAGACTGCCTTCAACTATTGGTAGAAAGCAATCGAATTCCAGAGGCAGCTTTAATGGCTAGATCTTATCTTCCGAGCAAGGCATCAGAGATAGTGGCAATTTGGAGAAAAGATCTCAATAAGGTTAATCCCAAGGCTGCTGAATCTTTGGCTGATCCTGAAGAATATCCAAATTTGTTTGAAGACTGGCAAATTGCACTTGGTGTTGAATCTAAAGCTGCAGAAACAAGGAATGTGTACCCTCCTGCAGACCAGTACGTCAACCATGCTGGCAAATCACACATTACTCTTGTTGAAGCTTTCAGAAACATGCAGATTGAAGAAGAGGAACATCTAGAGAATGGGTTGACTGAACAAAATGGAGATGAGCACTACACAGAGGAACAAAATGGAGAGGAAGGAAGCCAAGAGGAGGCAGTTGTAGTGGATGCAGATTCTACAGATGGTGCAGTACTCGTTAATGGTAACGAGGCTGAAGAAGACTGGGGTACGAATAATGAAGGAGCCCCGTCAGCCTAA 2739 0.4155 MQPLRLEIKRKLAQRSERVKCVDLHPTEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFIARRQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWVCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKGCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYLKGSRRVVIGYDEGTIMVKLGREVPVASMDNSGKIIWAKHNEIQTVNIKSVGADVEIADGERLPLAVKELGTCDLYPQNLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSFEGEYAVRESTSKIKIFSKNFQEKRSVRPTFSAERIFGGALLAMCSNDFICFYDWAECRLIYRIDVNVKNLYWADSGDLVTIASDTSFYILKYNRDVVMSHLDSGKPVDEEGVEDAFELLHEMNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLANQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVAHFLESRGMIEDALEVATDPDYRFDLAIRLGKLDVAKSIAIELQSESKWKQLGELAMSTGKLEMAEECLQHAMDLSGLLLLYSSLGDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKASEIVAIWRKDLNKVNPKAAESLADPEEYPNLFEDWQIALGVESKAAETRNVYPPADQYVNHAGKSHITLVEAFRNMQIEEEEHLENGLTEQNGDEHYTEEQNGEEGSQEEAVVVDADSTDGAVLVNGNEAEEDWGTNNEGAPSA 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00210 912 FunFam Coatomer subunit beta 591 799 - -
Vimu4g00210 912 CDD WD40 18 298 - -
Vimu4g00210 912 Gene3D - 12 301 IPR015943 GO:0005515
Vimu4g00210 912 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 182 219 - -
Vimu4g00210 912 MobiDBLite consensus disorder prediction 852 912 - -
Vimu4g00210 912 FunFam Coatomer subunit beta 12 301 - -
Vimu4g00210 912 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 139 173 - -
Vimu4g00210 912 SUPERFAMILY WD40 repeat-like 228 497 IPR036322 GO:0005515
Vimu4g00210 912 SMART WD40_4 175 216 IPR001680 GO:0005515
Vimu4g00210 912 SMART WD40_4 47 86 IPR001680 GO:0005515
Vimu4g00210 912 SMART WD40_4 89 128 IPR001680 GO:0005515
Vimu4g00210 912 SMART WD40_4 219 258 IPR001680 GO:0005515
Vimu4g00210 912 SMART WD40_4 5 44 IPR001680 GO:0005515
Vimu4g00210 912 SMART WD40_4 132 172 IPR001680 GO:0005515
Vimu4g00210 912 CDD Coatomer_WDAD_beta-like 305 780 - -
Vimu4g00210 912 ProSiteProfiles Trp-Asp (WD) repeats profile. 96 128 IPR001680 GO:0005515
Vimu4g00210 912 MobiDBLite consensus disorder prediction 852 871 - -
Vimu4g00210 912 Pfam Coatomer WD associated region 320 764 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Vimu4g00210 912 Gene3D - 591 799 - -
Vimu4g00210 912 SUPERFAMILY WD40 repeat-like 4 298 IPR036322 GO:0005515
Vimu4g00210 912 PIRSF Beta'-COP 3 884 IPR016453 -
Vimu4g00210 912 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 226 257 - -
Vimu4g00210 912 Pfam WD domain, G-beta repeat 178 216 IPR001680 GO:0005515
Vimu4g00210 912 Pfam WD domain, G-beta repeat 92 128 IPR001680 GO:0005515
Vimu4g00210 912 Pfam WD domain, G-beta repeat 222 257 IPR001680 GO:0005515
Vimu4g00210 912 Pfam WD domain, G-beta repeat 134 172 IPR001680 GO:0005515
Vimu4g00210 912 Pfam WD domain, G-beta repeat 19 44 IPR001680 GO:0005515
Vimu4g00210 912 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 96 128 - -
Vimu4g00210 912 ProSiteProfiles Trp-Asp (WD) repeats profile. 139 181 IPR001680 GO:0005515
Vimu4g00210 912 PRINTS G protein beta WD-40 repeat signature 245 259 IPR020472 -
Vimu4g00210 912 PRINTS G protein beta WD-40 repeat signature 159 173 IPR020472 -
Vimu4g00210 912 PRINTS G protein beta WD-40 repeat signature 203 217 IPR020472 -
Vimu4g00210 912 ProSiteProfiles Trp-Asp (WD) repeats profile. 182 225 IPR001680 GO:0005515
Vimu4g00210 912 ProSiteProfiles Trp-Asp (WD) repeats profile. 226 267 IPR001680 GO:0005515
Vimu4g00210 912 PANTHER COATOMER 6 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00210 Vimu-Chr4 1458288 1469504 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00210 73 293 Miscellaneous Gene Families AT5G08390 25.792 2.74e-18 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00210 K17302 - gmx:106794271 1778.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00210 4 1458288 1469504 Vimu4g00210 4 1458288 1469504 ECH
Vimu4g00210 4 1458288 1469504 Vimu11g02822 11 48305582 48314704 PCT