Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02822 TTGTTTGTCTCTTTGCTTTTTGCTTGCTTTTGTAGCCTCTCCGACTCGAAATTAAGGTACTCTTCTTTTTTTGTCTTTCGTATTGAGCGAAAACTTGCACAAAGATCAGAGAGAGTGAAGTCTGTGGATCTACATCCTACAGAACCATGGATTCTGGCAAGTTTATACTCTGGAACTGTCTGTATCTGGAACTACCAATCTCAGACCATGGCCAAGTCTTTTGAGGTTACTGAGTTACCAGTTAGGTCAGCTAAGTTTATTGCTCGCAGACAGTGGGTTGTGGCAGGGGCAGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTTAAAGTATTTGAGGCACATACAGATTACATTAGATGTGTTGCAGTTCATCCTACCCTTCCTTATGTGTTGTCATCATCTGATGATATGCTCATAAAGCTTTGGGATTGGGAAAAGGGCTGGATCTGTACCCAGATATTTGAGGGGCATTCTCATTATGTCATGCAAGTGACATTTAATCCTAAAGACACAAACACCTTTGCCAGTGCATCTCTTGATCGCACCATAAAGATTTGGAATCTTGGCTCCCCTGACCCCAATTTTACATTGGATGCCCATCAAAAGGGAGTGAATTGTGTTGATTACTTTACTGGCGGTGACAAACCTTATCTAATTACTGGTTCTGATGATCACACTGCCAAGGTATGGGATTATCAAACCAAAAGTTGTGTCCAGACTCTAGAGGGTCATACACACAATGTATCTGCTGTATGTTTTCATCCTGAACTACCTATAATCATTACTGGATCTGAGGATGGCACAGTGCGCATTTGGCATTCAACAACTTATAGGCTGGAGAACACATTGAACTATGGCCTTGAAAGAGTTTGGGCTGTTGGATACCTGAAGGGTTCACGTCGGGTTGTGATAGGCTATGATGAAGGTACTATTATGGTCAAACTTGGTCGAGAAGAACCTGTAGCCAGCATGGATAACAGTGGAAAAATAATTTGGGCTAAGCACAATGAAATTCAAACTGTCAATATAAGGAGTATAGGAGCAGATGTGGAGATTGCTGATGGAGAAAGGTTACCATTGGCTGTTAAGGAGTTGGGCACCTGTGATCTCTATCCCCAAAGTCTAAGGCACAATCCAAATGGGAGGTTTGTTGTTGTTTGTGGAGATGGGGAATACATTATATACACTGCTTTGGCATGGAGAAACAGATCATTTGGTTCTGCCTTGGAGTTTGCTTGGTCTTCAGATGGGGAATACGCTGAAAAGAAGAGTATCCGACCAACTTTTTCAGCTGAAAGAATATTTGGTGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTACGATTGGGCTGAATGCAGGTTGATTCGTCGTATTGATGTTAATGTTAAAAACCTTTACTGGGCTGACAGTGGTGATCTAGTGACAATTGCTAGTGATACATCATTCTACATCTTGAAGTACAATCGTGATGTTGTAGCATCATATTTAGATAGTGGAAGCCCTGCAGATGAGCAAGGTGTTGAAGATGCCTTTGAGCTCCTACATGAAACGAGTGAACGCATCAGGACAGGGATCTGGGTTGGGGATTGCTTTATCTACAACAATTCTTCTTGGAGGCTTAACTATTGTGTTGGTGGTGAGGTAACTACAATGTTTCATTTGGACCGTCCTATGTACTTGTTGGGATATCTTGCCAGCCAAAGTAGGGTCTATTTGATAGACAAGGAGTTCAATGTTATGGGATACACACTACTTTTAAGCTTGATTGAGTACAAGACACTTGTCATGCGTGGTGACTTAGAAAGAGCCAATGAAATTCTACCATCAATTCCTAAAGAACATCATAACAGATGTGACATCCACCGTAATTGCAATTGTTTATTTGTTTCCTTCACTAGTGTGGCTCGTTTCCTGGAATCACGAGGAATGATAGAGGATGCTCTTGAAGTAGCTACTGACCCTGACTACAGGTTTGATCTAGCCATTCAGCTTGGAAGATTAGAGGTTGCTAAGGGTATAGCCACTGAAGTGCAGAGTGAGTCTAAATGGAAGCAATTGGGAGAATTAGCTATGTCTACTGGAAAGTTAGAAATGGCTGAAGAGTGTTTAAAATTCGCTATGGATTTGAGTGGATTATTGCTGCTATATTCTTCTTTAGGCGATGCTGAAGGAATATCAAAACTTGCAACTCTTGCTAAAGAGCAAGGGAAAAATAATGTTGCATTCCTTTGCTTATTCACGTTGGGTAAACTTGAGGACTGCCTTCAGTTGTTGGTGGAAAGCAATCGGATTCCAGAGGCTGCTTTAATGGCTCGATCATATCTCCCGAGCAAGGTCCCTGAGATAGTGGCAATTTGGAGAAAAGATCTCAGTAAGGTAGGAACTGTTCACAGTCCATTTCCCTCTTCTGGATATTGGCAGGTTAATTCAAAAGCCGCAGAATCATTGGCTGATCCTGAGGAGTATCCTAATTTATTTGATGATTGGCAAGTTGCGCTTGCTGTTGAATCTAAAGCTGCAGAAGCAAGAGGTGTTTACCCTCCTGCATCAGAGTATGTGAACCAGGCTGATAAATCATATATCACCCTTGTGGAAGCTTTCAGAAACATGCAGGTAGAAGAAGGGGATCAACCTCTTGAGAATGGAGACTCTATCCACGAGTTGACTGAACATAACGGGGAAGAGCACTATCCAGATGAACATGAGGAACAAAATGGAGAGGAAGGTAGCCAAGAGGAGGCAGTTGTAGTGGATGCCGATTCTACGGATGGTGCAATCCTCATCAACGGTAATGAGGCGGACGAAGAGTAA 2838 0.4193 MFVSLLFACFCSLSDSKLRYSSFFVFRIERKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFIARRQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWICTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAVGYLKGSRRVVIGYDEGTIMVKLGREEPVASMDNSGKIIWAKHNEIQTVNIRSIGADVEIADGERLPLAVKELGTCDLYPQSLRHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFAWSSDGEYAEKKSIRPTFSAERIFGGTVLAMCSNDFICFYDWAECRLIRRIDVNVKNLYWADSGDLVTIASDTSFYILKYNRDVVASYLDSGSPADEQGVEDAFELLHETSERIRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNRCDIHRNCNCLFVSFTSVARFLESRGMIEDALEVATDPDYRFDLAIQLGRLEVAKGIATEVQSESKWKQLGELAMSTGKLEMAEECLKFAMDLSGLLLLYSSLGDAEGISKLATLAKEQGKNNVAFLCLFTLGKLEDCLQLLVESNRIPEAALMARSYLPSKVPEIVAIWRKDLSKVGTVHSPFPSSGYWQVNSKAAESLADPEEYPNLFDDWQVALAVESKAAEARGVYPPASEYVNQADKSYITLVEAFRNMQVEEGDQPLENGDSIHELTEHNGEEHYPDEHEEQNGEEGSQEEAVVVDADSTDGAILINGNEADEE 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02822 945 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 202 239 - -
Vimu11g02822 945 MobiDBLite consensus disorder prediction 888 913 - -
Vimu11g02822 945 SUPERFAMILY WD40 repeat-like 248 499 IPR036322 GO:0005515
Vimu11g02822 945 Pfam Coatomer WD associated region 340 784 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Vimu11g02822 945 Gene3D - 595 834 - -
Vimu11g02822 945 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 246 277 - -
Vimu11g02822 945 MobiDBLite consensus disorder prediction 883 945 - -
Vimu11g02822 945 SUPERFAMILY WD40 repeat-like 29 318 IPR036322 GO:0005515
Vimu11g02822 945 CDD Coatomer_WDAD_beta-like 325 800 - -
Vimu11g02822 945 SMART WD40_4 239 278 IPR001680 GO:0005515
Vimu11g02822 945 SMART WD40_4 25 64 IPR001680 GO:0005515
Vimu11g02822 945 SMART WD40_4 195 236 IPR001680 GO:0005515
Vimu11g02822 945 SMART WD40_4 67 106 IPR001680 GO:0005515
Vimu11g02822 945 SMART WD40_4 152 192 IPR001680 GO:0005515
Vimu11g02822 945 SMART WD40_4 109 148 IPR001680 GO:0005515
Vimu11g02822 945 PRINTS G protein beta WD-40 repeat signature 265 279 IPR020472 -
Vimu11g02822 945 PRINTS G protein beta WD-40 repeat signature 223 237 IPR020472 -
Vimu11g02822 945 PRINTS G protein beta WD-40 repeat signature 179 193 IPR020472 -
Vimu11g02822 945 Pfam WD domain, G-beta repeat 198 236 IPR001680 GO:0005515
Vimu11g02822 945 Pfam WD domain, G-beta repeat 241 277 IPR001680 GO:0005515
Vimu11g02822 945 Pfam WD domain, G-beta repeat 112 148 IPR001680 GO:0005515
Vimu11g02822 945 Pfam WD domain, G-beta repeat 155 192 IPR001680 GO:0005515
Vimu11g02822 945 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 116 148 - -
Vimu11g02822 945 ProSiteProfiles Trp-Asp (WD) repeats profile. 159 201 IPR001680 GO:0005515
Vimu11g02822 945 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 159 193 - -
Vimu11g02822 945 ProSiteProfiles Trp-Asp (WD) repeats profile. 246 287 IPR001680 GO:0005515
Vimu11g02822 945 ProSiteProfiles Trp-Asp (WD) repeats profile. 202 245 IPR001680 GO:0005515
Vimu11g02822 945 CDD WD40 38 318 - -
Vimu11g02822 945 PIRSF Beta'-COP 24 930 IPR016453 -
Vimu11g02822 945 ProSiteProfiles Trp-Asp (WD) repeats profile. 116 148 IPR001680 GO:0005515
Vimu11g02822 945 PANTHER COATOMER 27 334 - -
Vimu11g02822 945 FunFam Coatomer subunit beta 32 321 - -
Vimu11g02822 945 FunFam Coatomer subunit beta 595 834 - -
Vimu11g02822 945 Gene3D - 32 321 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02822 Vimu-Chr11 48305582 48314704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02822 93 284 Miscellaneous Gene Families AT5G08390 27.083 2.79e-18 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02822 K17302 - gmx:100797508 1697.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02822 11 48305582 48314704 Vimu11g02822 11 48305582 48314704 ECH
Vimu4g00210 4 1458288 1469504 Vimu11g02822 11 48305582 48314704 PCT