Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00208 ATGGCTACGGCAGGTGAAGAAGGGCTTGACTACGAGAGTGATCCCGAAGAGGCCACGAGATCGCTCGCAATGCGGAGAAGGCGCGAGGCCAGTGATGATGAGGAAGGCGACGCTGACACCGACGCGAGAAACACCGCAGTCGATCGCCGGATAACCCATTCCGATGATTCCGACGGCGAGGGTGGCGTGGCAGATTATGACGACGAAGAAGAATTGGAAGAAGAGGAAGAAGAAGAGGAGGAGGAAGAAGAGTTGTTGGAAGAGGAAGAGGACGAGGGTAAGGTTGGAGAGGAAAGAGGTTTGAATGGAACAGTAGTTAAGGACTCCGATGCTGATGTTAAAGGCCCTTTGGAGGAATCTGGGAATGGAGATGATGAGGAGAAGAAGGAGAATGAACCGTTTGCGGTGCCCACTGCTGGAGCATTTTATATGCACGATGATCGCTTCAGGGATAATGCCGGTGCACGCCACAGGCGCATGCGTGGTGGAAGGAGACTCTGGGAGTCCAAGGATGACAGGAAATGGGGACATGATAAGTTTGAGGAAATTTCTCTGCAAGAAAGGCAATACAAAGAGGGAAGGAGACCTTCTAAGGGTAGTTATCGAGGTCGTGGAGGTAAAACACGAGGTGTTGATCGCAGTGGAGGATATGTCCGAGGTAACAGAAAAGGGTATGATAACAGAGGCAATCAAACACAGGCACCCAAGAGTGTTGTGCGAGGGAGAGGACCCCGTAGGTACGAGCCTACTAATAAGAGCAATGATTCAGCATCTCATGTGCAAAATAAACAATACGGGAAACAGCCTGAGAAAGTTTCGCATGGTGGTTCAGGGAAAACTTTCACCCCTGTCTCTAATTCAGAACCCGATCCTGTACCTTCTAAGAAACAGGTCTTTGCATCAAATTTGAATTATGCTTCTCCCCCTTTTTACCCTTCGAGTTCTTCCAACAAAGATACAAGTGTGACATCAAAAGGGGATATCCCAACTGCTGCTTCAAGTAGGAACGTTCGGCCTGGTGTTGTCGATGAGGGTTTTTTGGTTCAACAGAACAACGTACTTCTCCGGGGAAAGAATGTTGTCGATCATGTCAGCATGGAGAAGTTGTATATTGATGGGCCTGGCGCTCCATCTGTTGGGAAAGCTTTTAACAGTTTGCATATGCCGCCACCTGGATCTTCTGGAGTTAATGCATCTCAATCTACTCATCCAAGAGGTACTGGAAGGGGTGGAGCAGTACCAGTGCAGATGAATTATCAGCCTGCTGCTTCTCATAATCAAGCTGGTAAAATTGATCCAACTCAACTCCAGGCTATTCAGAGAACTGCTCCTGGGCGAACTTCTCCGTCTGTGCAAGCCCCTGCTCCACAGTTGGGTCATCGACCTGGTACTGGGTCTCAGGCTTCATCTCCCCCAATCACAACCGCTGCAATTGGTTCATTGGATTCTGGAGAAATTGAGGCAGCTTCGGAATCAGGTAAATTGAAGGGTGCATTGGTTGGGAAGGGAAGGGAGGCTTCCCAGGGTAGCGGAAGGGGTTCTTTTGTTTATGGTGGAACTATGGGTACTGCTGGAAATATCAATGGTAATCATGGGGATCAGAACTTTCCAACCTTTTTGCCAGTTATGCAATTTGGTGGGCAGCATCCTGGTGGCTTAGGAGTTCCTGCGGTCGGCATGGCATTCCCTGGATATGTTGCTCAGCCTCAACTTGGTTTGGGAAACTCTGAAATGACATGGCTACCGGTTTTGACTGGAGCAGCAGGAGCTTTAGGGGCTGCTGGAGCTTTAGGGGCGGCAGGTGCTTTAGGGGCCACATACTGTCCACCCTATCTCACTGTTGATGGTGCTTATCATGCACGACAATCAGGGCAGACATCCGCAACAGCTACTTCAAGCAAGGAAAATAATGTGAATAAAGGTAGCAATGAATGGAAGGCACCACCAAAGTCTGAGACTGTAAATGATGAGTTTGGACAGCGGCATAATAAACCCCGCAGGCAAGTTGATTTTTGA 2016 0.4906 MATAGEEGLDYESDPEEATRSLAMRRRREASDDEEGDADTDARNTAVDRRITHSDDSDGEGGVADYDDEEELEEEEEEEEEEEELLEEEEDEGKVGEERGLNGTVVKDSDADVKGPLEESGNGDDEEKKENEPFAVPTAGAFYMHDDRFRDNAGARHRRMRGGRRLWESKDDRKWGHDKFEEISLQERQYKEGRRPSKGSYRGRGGKTRGVDRSGGYVRGNRKGYDNRGNQTQAPKSVVRGRGPRRYEPTNKSNDSASHVQNKQYGKQPEKVSHGGSGKTFTPVSNSEPDPVPSKKQVFASNLNYASPPFYPSSSSNKDTSVTSKGDIPTAASSRNVRPGVVDEGFLVQQNNVLLRGKNVVDHVSMEKLYIDGPGAPSVGKAFNSLHMPPPGSSGVNASQSTHPRGTGRGGAVPVQMNYQPAASHNQAGKIDPTQLQAIQRTAPGRTSPSVQAPAPQLGHRPGTGSQASSPPITTAAIGSLDSGEIEAASESGKLKGALVGKGREASQGSGRGSFVYGGTMGTAGNINGNHGDQNFPTFLPVMQFGGQHPGGLGVPAVGMAFPGYVAQPQLGLGNSEMTWLPVLTGAAGALGAAGALGAAGALGATYCPPYLTVDGAYHARQSGQTSATATSSKENNVNKGSNEWKAPPKSETVNDEFGQRHNKPRRQVDF 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00208 671 MobiDBLite consensus disorder prediction 625 649 - -
Vimu4g00208 671 MobiDBLite consensus disorder prediction 1 298 - -
Vimu4g00208 671 PANTHER PROTEIN MLN51 HOMOLOG 1 669 IPR044796 GO:0003729|GO:0006397|GO:0035145
Vimu4g00208 671 MobiDBLite consensus disorder prediction 655 671 - -
Vimu4g00208 671 MobiDBLite consensus disorder prediction 14 33 - -
Vimu4g00208 671 MobiDBLite consensus disorder prediction 462 477 - -
Vimu4g00208 671 Coils Coil 63 92 - -
Vimu4g00208 671 MobiDBLite consensus disorder prediction 164 209 - -
Vimu4g00208 671 SMART Btz_2 94 205 IPR018545 GO:0003729|GO:0006397|GO:0035145
Vimu4g00208 671 MobiDBLite consensus disorder prediction 442 477 - -
Vimu4g00208 671 MobiDBLite consensus disorder prediction 381 415 - -
Vimu4g00208 671 MobiDBLite consensus disorder prediction 40 60 - -
Vimu4g00208 671 MobiDBLite consensus disorder prediction 61 94 - -
Vimu4g00208 671 Pfam CASC3/Barentsz eIF4AIII binding 118 206 IPR018545 GO:0003729|GO:0006397|GO:0035145
Vimu4g00208 671 MobiDBLite consensus disorder prediction 278 298 - -
Vimu4g00208 671 MobiDBLite consensus disorder prediction 250 268 - -
Vimu4g00208 671 MobiDBLite consensus disorder prediction 390 406 - -
Vimu4g00208 671 MobiDBLite consensus disorder prediction 310 336 - -
Vimu4g00208 671 MobiDBLite consensus disorder prediction 95 133 - -
Vimu4g00208 671 MobiDBLite consensus disorder prediction 310 331 - -
Vimu4g00208 671 MobiDBLite consensus disorder prediction 625 671 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00208 Vimu-Chr4 1446287 1449522 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00208 - - gmx:100816837 1063.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00208 4 1446287 1449522 Vimu4g00208 4 1446287 1449522 ECH
Vimu4g00208 4 1446287 1449522 Vimu11g02821 11 48298106 48303857 PCT