Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00206 ATGGAGTTGATTTCAGGTCTACCAGAGGACGTTGCCCGAGACTGTTTAATTAGGGTTCCGTACGAGAAATTCGCGGCGGTGGCATCCGTCTGCAAAGGTTGGAACTCGGAGATTTACTCGCCGGAGTTTCACCGTCGGAGGAGAACCACAAAACACGCACAAAAAATCCTTGTCACGGTTCAATCCAAGATAGACTCCGAAAAAACCCGAACCGGCTTGCTTGCGAAGGCCTCTGCGAATCCGGTTTACCGGCTGAGCGTGTTCGAACCGGAGACGGGTATATGGAGCGAGTTGCCCCTGGGACCCGAACTCGCTTCCGGGTTACCCATGTTCTGTCAGATTGCGGGTGTCGGGTACGAGCTTGTCGTTTTGGGCGGGTGGGACCCAGAATCGTGGAAAGCGTCGAATTCGGTTTTTATCTACAACTTTCTCTCAGCCAAGTGGCGGCGTGGGGCCGACATGCCGGGTGGGCCCCGAACGTTTTTCGCATGCGCGTCTGATCAAAATCAGACGGTGTACGTAGCGGGCGGGCACGACGAGGAGAAGAACGCGCTGAAGTCCGCGCTTGCGTATGACGTAGCGAACGACGTGTGGGTCGCTCTCCCGGACATGTCACGCGAGCGCGACGAGTGCAAGGCCGTGTTCCGCCGTGGCGCGCTCAGCGTCGTGGGTGGATACTGCACGGAGATGCAGGGGCGGTTCGAGAAGAGCGCGGAGGTTTTCGACGTGGCCACTTGGAAGTGGGGCCCGGTGGAGGAGGAGTTCTTGGATGCAGCCGCGTGTCCTCGAACATGCGTGGACGGAGGCGATGGTGCTGAAGGGGAAATGTACATGTGCCGCGGCGGTGACGTGGTGGTGTTGCGGGGAGACACGTGGCGGAGGGTTGCGAAGGTACCGAGTGAGATTCGGAACGTTGCGTGCGTGGGAGTGTGGGAAGAGACCATGTTTGTTATTGGGTCAAGTGGGTTTGGGGAACCGCATATGGGCTTTGTTTTGGATCTGAAGAATGGGGCTTGGGCCAAAGTGGCAAGCCCGGAGGAGTACACTGGGCATTTGCAATCCAGTTGTATTTTGGAAATCTAG 1083 0.5753 MELISGLPEDVARDCLIRVPYEKFAAVASVCKGWNSEIYSPEFHRRRRTTKHAQKILVTVQSKIDSEKTRTGLLAKASANPVYRLSVFEPETGIWSELPLGPELASGLPMFCQIAGVGYELVVLGGWDPESWKASNSVFIYNFLSAKWRRGADMPGGPRTFFACASDQNQTVYVAGGHDEEKNALKSALAYDVANDVWVALPDMSRERDECKAVFRRGALSVVGGYCTEMQGRFEKSAEVFDVATWKWGPVEEEFLDAAACPRTCVDGGDGAEGEMYMCRGGDVVVLRGDTWRRVAKVPSEIRNVACVGVWEETMFVIGSSGFGEPHMGFVLDLKNGAWAKVASPEEYTGHLQSSCILEI 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00206 360 SUPERFAMILY Kelch motif 80 342 IPR015915 GO:0005515
Vimu4g00206 360 CDD F-box_AtAFR-like 3 47 - -
Vimu4g00206 360 Gene3D - 44 357 IPR015915 GO:0005515
Vimu4g00206 360 Pfam F-box domain 4 45 IPR001810 GO:0005515
Vimu4g00206 360 Pfam Kelch motif 161 205 IPR006652 GO:0005515
Vimu4g00206 360 Pfam Kelch motif 115 155 IPR006652 GO:0005515
Vimu4g00206 360 PANTHER OS02G0208700 PROTEIN 2 360 IPR044595 GO:0080037|GO:2000762
Vimu4g00206 360 SUPERFAMILY F-box domain 3 55 IPR036047 GO:0005515
Vimu4g00206 360 SMART kelc_smart 120 168 IPR006652 GO:0005515
Vimu4g00206 360 SMART kelc_smart 171 218 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00206 Vimu-Chr4 1435577 1436659 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00206 - - vum:124828606 733.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00206 4 1435577 1436659 Vimu4g00206 4 1435577 1436659 ECH
Vimu4g00206 4 1435577 1436659 Vimu11g02819 11 48289030 48290960 PCT