Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02819 ATGGAGTTGATTTCGGGTCTACCACAGGACGTAGCACGGGACTGTCTCATTCGGGTTTCGTACCAGCAGTTCCCCACGGTGGCGTCGGTGTGCAAGCTCTGGAAATCGGAGATTCTTTCGCCGGAGTACCACCGTCAACGGCGAAGCACGAAAAACGCGCAGAAGCTCATAGCGATGGTTCAGGCTCGAGTCCAACCGGGAACTGGTTCGATCAAGCGAGTGACGAACCCGGTTTACCGTCTCAGCGTGTTCGAACCGGAAACGGGTCACTGGAACGAGCTGCCACCACCGCCCGAGTTTTATTCCGGGTTGCCTATGTTCTGTCAGTTAGTTAGTGTCGGGTACGATCTTGTCTTGTTGGGCGGGTTGGACCCGAATTCGTGGAAAGCTTCGAATTCTGTGTTTGTGTACAATTTCTTGTCGGCGGAGTGGCGCCGCGCAGCGGACATGCCGGGTGGGCCCCGCACGTTTTTCGCTTGCGCGTCGGATTCTAAGGGGACAGTTTTTGTTGCCGGTGGACACGACAACGAGAAGAACGCGCTGCGTTCGGCGCTGGCCTATGAGGTTACCTCGGACCGGTGGGTTTCACTTCCTGACATGGTGGCGGAGCGGGACGAGTGCAAGGGCGTTTTCCGTCGCGGGAAGTTCTTCGTCGTCGGGGGCTACCCGACGGAGAAGCAGGGAAGGTTCGAGAAGAGCGCGGAGGCGTTCGATCCTGCTACATGGCGGTGGGACGAAGTGAAAGAGGACTTCTTGGATTGCGCCACGTGTCCGAGGACGTTAGTTGACGGTGGTGATGACGAGGCGGTGTTTCTTTGCAGCGGCGGGGACTTGATCTCGCTTCGCGGGAACACGTGGCAGAAGATATCGACGGTGCCGGGGGAGATACGCAACGTAGCGTACATTGGGGCGTTGGATGGGACGCTGGTTTTGATCGGATCTAGCGGCTACGGTGAAGTCCACGTAGCTTTTGCTTTCGATCTTGAGAGTTGCAACTGGAGGAAACTGGATTGCCCAGAAGGGTTCATGGGCCATATCCAAAACGGTTGCGTTTTGGAGATTTAG 1065 0.569 MELISGLPQDVARDCLIRVSYQQFPTVASVCKLWKSEILSPEYHRQRRSTKNAQKLIAMVQARVQPGTGSIKRVTNPVYRLSVFEPETGHWNELPPPPEFYSGLPMFCQLVSVGYDLVLLGGLDPNSWKASNSVFVYNFLSAEWRRAADMPGGPRTFFACASDSKGTVFVAGGHDNEKNALRSALAYEVTSDRWVSLPDMVAERDECKGVFRRGKFFVVGGYPTEKQGRFEKSAEAFDPATWRWDEVKEDFLDCATCPRTLVDGGDDEAVFLCSGGDLISLRGNTWQKISTVPGEIRNVAYIGALDGTLVLIGSSGYGEVHVAFAFDLESCNWRKLDCPEGFMGHIQNGCVLEI 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02819 354 SMART kelc_smart 167 214 IPR006652 GO:0005515
Vimu11g02819 354 SMART kelc_smart 116 164 IPR006652 GO:0005515
Vimu11g02819 354 CDD F-box_AtAFR-like 3 47 - -
Vimu11g02819 354 SUPERFAMILY F-box domain 3 53 IPR036047 GO:0005515
Vimu11g02819 354 PANTHER OS02G0208700 PROTEIN 2 354 IPR044595 GO:0080037|GO:2000762
Vimu11g02819 354 Pfam Kelch motif 165 200 IPR006652 GO:0005515
Vimu11g02819 354 Gene3D - 68 340 IPR015915 GO:0005515
Vimu11g02819 354 Pfam Kelch motif 105 155 - -
Vimu11g02819 354 SUPERFAMILY Kelch motif 76 336 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02819 Vimu-Chr11 48289030 48290960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02819 7 209 Miscellaneous Gene Families AT4G33900 24.891 1.02e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02819 - - gmx:100796602 632.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02819 11 48289030 48290960 Vimu11g02819 11 48289030 48290960 ECH
Vimu4g00206 4 1435577 1436659 Vimu11g02819 11 48289030 48290960 PCT