LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu4g00184	ATGTTGCGGAGATTCCTCTCTCATTCCAATCTCAAATCTCTACACACGGCGCTCTCACCTTCTCGTCCCCGATTCGCCGCCCCTCTCCTCACCCGCCACGTCACTGCTCAATCAGGCGCTTCTTCCGTCAGAAAGAGGGTCGAAGATGTCGTGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCCAGTCTCGAGGGAAGGGATATTCTTGAAATCAACCATCCTGAAGGTCCTTTCGGCACAAAGGAAGCACCTGCTATTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGGTGAAGGTGAAGATGAGCATGATGTTGTATGGTTTTGGCTGGAGAATGGCAAGCCTCATGAATGTCCAGTGTGCTCACAGTACTTTGAGGTAAGTTGGAAATTACATTTAGAATCTGCTGATATCATTGTGACCTACCATGATATATTTGGTCTTAGATGTCAAGATACGTGA	483	0.4803	MLRRFLSHSNLKSLHTALSPSRPRFAAPLLTRHVTAQSGASSVRKRVEDVVPIATGHEREEIQASLEGRDILEINHPEGPFGTKEAPAIVKSYFDRRIVGCPGGEGEDEHDVVWFWLENGKPHECPVCSQYFEVSWKLHLESADIIVTYHDIFGLRCQDT	160

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu4g00184	160	Pfam	Cytochrome c oxidase subunit Vb	54	134	IPR002124	GO:0005740\|GO:0005751\|GO:0006123
	Vimu4g00184	160	Gene3D	Cytochrome c oxidase, subunit Vb	44	139	IPR036972	GO:0005740\|GO:0005751\|GO:0006123
	Vimu4g00184	160	FunFam	Cytochrome c oxidase subunit Vb	43	136	-	-
	Vimu4g00184	160	SUPERFAMILY	Rubredoxin-like	44	134	-	-
	Vimu4g00184	160	ProSiteProfiles	Cytochrome c oxidase subunit Vb, zinc binding domain profile.	41	141	IPR002124	GO:0005740\|GO:0005751\|GO:0006123
	Vimu4g00184	160	CDD	Cyt_c_Oxidase_Vb	45	132	IPR002124	GO:0005740\|GO:0005751\|GO:0006123
	Vimu4g00184	160	PANTHER	CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL	1	134	IPR002124	GO:0005740\|GO:0005751\|GO:0006123

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu4g00184	Vimu-Chr4	1206744	1208603	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu4g00184	K02265		-	gmx:100801050	248.44

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu11g02802	11	48127773	48131634	Vimu4g00184	4	1206744	1208603	ECH
	Vimu4g00184	4	1206744	1208603	Vimu4g00184	4	1206744	1208603	ECH
	Vimu4g00184	4	1206744	1208603	Vimu11g02802	11	48127773	48131634	PCT