Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02802 ATGTTGCGGAGGTTTCTCTCTTCCAACCTAAAAACCCTAGCCGCCGCTTCTTCCTCCTCTCTTACTTCCCGATCTGCTTCCGCCGCCGCCAGATTCCCCGCTCTTTCTCGCTCCTACCGCTACTTCTCAACTCAATCCGAGGATGCTACTGCGATCAAAAAGAAGGTTGAGGATGTAATGCCTATCGCTACCGGACACGAGCGCGAGGAGCTTGAAGCTGAGCTCGAGGGAAGGGATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAGATTTATGCTTGTGTGGCAGTTTTCCATTTGAAGGCTAGGAAACCCTGTAGTGCACTATTTCCTGGTAACACCCCCTCCAGGGCGTACACACTACATGAAGCACCTGCCATTGTAAAATCTTACTATGATAAAAGGATAGTTGGATGCCCAGGCGGTGAAGGCGAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTCATGAATGTCCTGTGTGCGCACAATATTTTGTTGTAAGTTCACAATTATGCTTAAAATATCTATTACTGTTGCGTAATATTTTTGTGCTTGAAGTGGTAGGACCTGGTGGACCACCCGATGGACATGGCGATGATGATCACCACCATTGA 639 0.482 MLRRFLSSNLKTLAAASSSSLTSRSASAAARFPALSRSYRYFSTQSEDATAIKKKVEDVMPIATGHEREELEAELEGRDILEIDHPEGPFGTKIYACVAVFHLKARKPCSALFPGNTPSRAYTLHEAPAIVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCAQYFVVSSQLCLKYLLLLRNIFVLEVVGPGGPPDGHGDDDHHH 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02802 212 SUPERFAMILY Rubredoxin-like 119 175 - -
Vimu11g02802 212 Gene3D Cytochrome c oxidase, subunit Vb 52 95 IPR036972 GO:0005740|GO:0005751|GO:0006123
Vimu11g02802 212 SUPERFAMILY Rubredoxin-like 52 93 - -
Vimu11g02802 212 ProSiteProfiles Cytochrome c oxidase subunit Vb, zinc binding domain profile. 51 182 IPR002124 GO:0005740|GO:0005751|GO:0006123
Vimu11g02802 212 Gene3D q5lls5 like domains 125 179 - -
Vimu11g02802 212 PANTHER CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL 1 211 IPR002124 GO:0005740|GO:0005751|GO:0006123
Vimu11g02802 212 Pfam Cytochrome c oxidase subunit Vb 125 174 IPR002124 GO:0005740|GO:0005751|GO:0006123
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02802 Vimu-Chr11 48127773 48131634 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02802 K02265 - gmx:100780886 208.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02802 11 48127773 48131634 Vimu4g00184 4 1206744 1208603 ECH
Vimu11g02802 11 48127773 48131634 Vimu11g02802 11 48127773 48131634 ECH
Vimu4g00184 4 1206744 1208603 Vimu11g02802 11 48127773 48131634 PCT