Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00173 ATGGAAGCGGTGCAGCTGCTGGCATTGCGGCTGCGCGCAGTTCCGGTGGCGGCATACCTCTTTCGAAACGCCTTCGTAATGGGCGGCGGCTTTCGCAGCAGCAGCAGCACCACCAGCACGGGCATGAGCGGAATGGCAGGGAAGAGGATGAGCTCTGGTTCGGGATGGTTGATGGGCGGAGCATTGAAGTTACCGAAAATTGTGAAAGCCGGAGAGCCGGTTCTGCACGAGCGAGCCAAAGAAGTTGAGCCGTCGGAGATGAAATCGGAGAGAGTGCAGAAGATCATCGACGACATGATCCGCGTCATGCGAAAGGCACCTGGAGTTGGCCTCGCTGCTCCACAGATTGGAATTCCCCTAAGGATAATTGTTTTGGAAGATAAAGTAGAATATATGGGTTATGACGATGAGGAAGCCCTCAAAGAACAAGATAGAAGACCTTTTCATCTTTTGGTGATATTGAATCCTAAGCTCAAGAAGAAGACCAACAGGACTGCACTCTTCTTTGAAGGATGTTTGAGTGTTGCTGGGTACGCTGTGGTAGAGCGATACCTTGATGTTGAGGTTGAAGGTTTTGATCGTTACGGGGAACCCGTAAAAGTAAATGCTACTGGTTGGCAGGCTCGGATTTTACAGCATGAGTGTGATCACTTGGACGGAACACTGTATCTTGATAAGATGGTACCTAGAACATTCAGAGCTCCAGAAAACAGTTCAAAGCCTCTTGCCTGTGGTTGCGTGTTAGAGCTAGAAGTTGAATCAGCTTCTTATGAGCTCATCAACACAAATTTCTTGTGCAGGTCAGTGAAAAGTTGTCACTTATAG 825 0.4885 MEAVQLLALRLRAVPVAAYLFRNAFVMGGGFRSSSSTTSTGMSGMAGKRMSSGSGWLMGGALKLPKIVKAGEPVLHERAKEVEPSEMKSERVQKIIDDMIRVMRKAPGVGLAAPQIGIPLRIIVLEDKVEYMGYDDEEALKEQDRRPFHLLVILNPKLKKKTNRTALFFEGCLSVAGYAVVERYLDVEVEGFDRYGEPVKVNATGWQARILQHECDHLDGTLYLDKMVPRTFRAPENSSKPLACGCVLELEVESASYELINTNFLCRSVKSCHL 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00173 274 Gene3D Peptide deformylase 62 251 IPR036821 -
Vimu4g00173 274 NCBIfam peptide deformylase 66 230 IPR023635 GO:0042586
Vimu4g00173 274 Pfam Polypeptide deformylase 66 230 IPR023635 GO:0042586
Vimu4g00173 274 Hamap Peptide deformylase [def]. 63 242 IPR023635 GO:0042586
Vimu4g00173 274 PRINTS Peptide deformylase signature 170 181 IPR023635 GO:0042586
Vimu4g00173 274 PRINTS Peptide deformylase signature 97 126 IPR023635 GO:0042586
Vimu4g00173 274 PRINTS Peptide deformylase signature 200 229 IPR023635 GO:0042586
Vimu4g00173 274 SUPERFAMILY Peptide deformylase 64 235 IPR036821 -
Vimu4g00173 274 FunFam Peptide deformylase 64 246 - -
Vimu4g00173 274 CDD Pep_deformylase 67 223 IPR023635 GO:0042586
Vimu4g00173 274 PANTHER PEPTIDE DEFORMYLASE 63 238 IPR023635 GO:0042586
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00173 Vimu-Chr4 1126064 1128237 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00173 K01462 - gmx:100306710 325.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00173 4 1126064 1128237 Vimu4g00173 4 1126064 1128237 ECH
Vimu4g00173 4 1126064 1128237 Vimu11g02791 11 48078768 48081304 PCT