Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02791 TTGTCAACCCATTCATATGTTATCCTAAAAGAAACATTCATATGTTGTCTAATAAGTCCAAAATTAGCAGAAGCCCTGAACACTCGCTCTGAGGTGGTGAAGATTTGCACAACAATCCGCATAAAGCGAGCAAAAAGGGGCATGGAGGCCTTGCACTTGCACCGCGTGCTCCCCATGCCTGTTCCTCAAAACTCCATCTTTTGGCGTTCAACCGCTACCCAATTAACCACAATTCCCATTGCAAGGCCACCATTGCTTCGGAAATCAGCACCCACATCCCAAACTTGCACTGCCAGAGCAGGGTGGTTTTTAGGTCTTGGAGCTGATACCATGAAGACAAATTTACCTGACACTGTCAAAGCCGGTGATCCTGTTCTGCACGAGCCTGCTCGGGAAGTTGATCCCAATGAGATAAAGTCAGAGAAAGTGCAGAATATCATTGATGACATGATTCGGGTCATGAGGAAGGCTCCTGGAGTTGGTCTAGCTGCTCCCCAGATTGGAATTCCTTTCAGGATAATTGTTTTGGAAGATACCAAAGAGTACATTAGTTATGTCCCGAAGGAAGAGGCTAGAGTCCAAGATAGAAGACCTTTTGATCTTTTGGTCATCCTGAATCCCAAGCTAGAGAAGAAGAGCAAGAAGACTGCTCTATTTTTTGAAGGGTGTTTGAGGTGTGTGCTTCTGTCTTTGCTTGATTGTTTGGATCGCTATGGTGCACCAATCAAAATAAACGCTTCTGGGTGGCAGGCCCGGATTTTACAACATGAGTGTGATCATTTGGATGGAACTCTGTATGTTGATAAGATGGTACCTAGAACTTTCAGAACAGTGGACAACCTTGACCTGCCTCTTGCTCAGGGGTGTCCCAAACTTGGCCCTCGCTAA 888 0.4572 MSTHSYVILKETFICCLISPKLAEALNTRSEVVKICTTIRIKRAKRGMEALHLHRVLPMPVPQNSIFWRSTATQLTTIPIARPPLLRKSAPTSQTCTARAGWFLGLGADTMKTNLPDTVKAGDPVLHEPAREVDPNEIKSEKVQNIIDDMIRVMRKAPGVGLAAPQIGIPFRIIVLEDTKEYISYVPKEEARVQDRRPFDLLVILNPKLEKKSKKTALFFEGCLRCVLLSLLDCLDRYGAPIKINASGWQARILQHECDHLDGTLYVDKMVPRTFRTVDNLDLPLAQGCPKLGPR 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02791 295 SUPERFAMILY Peptide deformylase 115 277 IPR036821 -
Vimu11g02791 295 PRINTS Peptide deformylase signature 243 272 IPR023635 GO:0042586
Vimu11g02791 295 PRINTS Peptide deformylase signature 148 177 IPR023635 GO:0042586
Vimu11g02791 295 Pfam Polypeptide deformylase 119 273 IPR023635 GO:0042586
Vimu11g02791 295 FunFam Peptide deformylase 115 289 - -
Vimu11g02791 295 Gene3D Peptide deformylase 114 294 IPR036821 -
Vimu11g02791 295 CDD Pep_deformylase 119 266 IPR023635 GO:0042586
Vimu11g02791 295 PANTHER PEPTIDE DEFORMYLASE 111 289 IPR023635 GO:0042586
Vimu11g02791 295 Hamap Peptide deformylase [def]. 114 281 IPR023635 GO:0042586
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02791 Vimu-Chr11 48078768 48081304 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02791 K01462 - gmx:100784292 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02791 11 48078768 48081304 Vimu11g02791 11 48078768 48081304 ECH
Vimu4g00173 4 1126064 1128237 Vimu11g02791 11 48078768 48081304 PCT