Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00171 CCCACCCATTTCGCCTCGGTAGGTGCACTTCCTCTCTTTTCTCTTCTGCTCCTTCATTTTCTCTCTTCTTTTCTCTATCTGGATTTGCATTTTCATCACTTTCATTCCATGCTTCACGAAATGAAAGAAAGCGTGGAAAACCCTCTGCACCTAAAATCTGTCAACCATATCTCTCTCATCTGTACCTCCGTCGAGAAATCCATCAATTTCTATCAGAACATTCTCGGCTTCTTCCCCATCAGGAGGCCAAGATCATTGGATTTTGACGGAGCATGGCTATTCGGATATGGAATTGGAATTCACTTGCTTCAAGCAGAGGACCCCAGCAACATTCCAAGAAAGAAAGAAATTAATCCGAAAGATAATCACATATCATTCCAGGCAAGCATGGGAGCAGTGGAGAAGAAGCTTGAGGAAATGGAGATAGAATACGTGCGTGCAACGGTGGAGGAAGGTGGGATCAAAGTGGATCAGTTGTTTTTTCACGACCCAGATGGGTTCATGATTGAGATATGCAACTGTGATATCCTTCCAGTGATTCCTTTAGCAAGTGACATGGTTACGTCATGCTCTCGAATGAACCTTCAGATGCTTCAACAGAGACAGATACACCAAATTGTGAAACAGGATTCAACTTTTCCTTCGGGCCACACCAAAATTCAAAACACTATTGTCTAG 678 0.4322 PTHFASVGALPLFSLLLLHFLSSFLYLDLHFHHFHSMLHEMKESVENPLHLKSVNHISLICTSVEKSINFYQNILGFFPIRRPRSLDFDGAWLFGYGIGIHLLQAEDPSNIPRKKEINPKDNHISFQASMGAVEKKLEEMEIEYVRATVEEGGIKVDQLFFHDPDGFMIEICNCDILPVIPLASDMVTSCSRMNLQMLQQRQIHQIVKQDSTFPSGHTKIQNTIV 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00171 225 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 53 174 IPR037523 -
Vimu4g00171 225 CDD VOC_like 54 171 - -
Vimu4g00171 225 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 54 171 IPR004360 -
Vimu4g00171 225 Coils Coil 130 150 - -
Vimu4g00171 225 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 49 172 IPR029068 -
Vimu4g00171 225 PANTHER - 42 203 - -
Vimu4g00171 225 Gene3D - 29 184 IPR029068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00171 Vimu-Chr4 1119858 1120836 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00171 - - tcc:18595729 287.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00171 4 1119858 1120836 Vimu4g00171 4 1119858 1120836 ECH
Vimu4g00171 4 1119858 1120836 Vimu11g02789 11 48070160 48071405 PCT