Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00170 ATGGGCTTGGCCGAGTGTGATTTAGTTGGAACGGTGCAGAGTGAATATAATGTTGGGCCCAGGCCCAGACCCTTGGGAGTGAGAAAGGAGTACATCCTAAAGAGAGCAATGGAAAGCATAACAGAGGGAGTGAACAACATCAACATCACCGATTCCTACAAGAAGAATCGCATTCAGGTCTCTAACACTAAGAAGCCCCTCTTCTTCTATGTTAATCTCGCCAAGGTAAGATACATGCAACAGCATAACGAGGTCGAACTTTCAGCTCTAGGAATGGGTATTGAAACCCCTCTCCTTGTTTCTGTTTTTGAAGTTTTCTCCTTGACTGATGATTACCTTCGGGAAGATCTACACACTGGCATTTCTTCTAGTGAGGCTATTGCCACAGTGGTAACTGTTGCTGAAATTTTGAAAAACAACGGACTTGCTGTGGAGAAGAAAATCACGACATCAACTGTTGACATAAAGGACGATTCCAGAGGTAGACCTGTTCAGAAGGCCAAGATTGAAATAGTACTTGGAAAAACAGCAAACTTCGATGAATTGATGGCGGCTGCTGCTGCTGCTGAAGACGGTGAAAATGGAGACGCTGAAGAGCAAAACGCATAA 609 0.4433 MGLAECDLVGTVQSEYNVGPRPRPLGVRKEYILKRAMESITEGVNNINITDSYKKNRIQVSNTKKPLFFYVNLAKVRYMQQHNEVELSALGMGIETPLLVSVFEVFSLTDDYLREDLHTGISSSEAIATVVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKIEIVLGKTANFDELMAAAAAAEDGENGDAEEQNA 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00170 202 SUPERFAMILY AlbA-like 125 184 IPR036882 GO:0003676
Vimu4g00170 202 Gene3D - 100 200 IPR036882 GO:0003676
Vimu4g00170 202 SUPERFAMILY AlbA-like 55 98 IPR036882 GO:0003676
Vimu4g00170 202 PANTHER DNA/RNA-BINDING PROTEIN ALBA 3 37 191 IPR014560 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00170 Vimu-Chr4 1110056 1112538 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00170 - - lang:109351177 212.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00170 4 1110056 1112538 Vimu4g00170 4 1110056 1112538 ECH
Vimu4g00170 4 1110056 1112538 Vimu11g02788 11 48063022 48064965 PCT