Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02788 ATGGAAGCAATCACGGAGGGAGTGAACAACATCAATATCACCGAAACTTACAAGAAGAATCGTATTCAGGTCTCCAATACCAAAAAGCCTCTCTTCTTTTACGTTAATCTAGCCAAGAGGTACATGCAACAGCATAATGAGGTCGAACTCTCAGCACTGGGAATGGCTATTGCTACAGTTGTTACTGTTGCTGAAATCTTGAAAAACAATGGGCTTGCTGTTGAAAAGAAAATCATGACATCAACAGTTGACATAAAAGATGATTCCAGAGGAAGACCTGTCCAGAAGGCCAAGATTGAAATATTGTTGGGAAAGACTGCAAACTTCGATGAGTTGATGGCTGCAGCGGCTGCTGAAGCTGGTGAAAATGGAGATGCTGAAGAGCAAACAAATTAG 396 0.4167 MEAITEGVNNINITETYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIMTSTVDIKDDSRGRPVQKAKIEILLGKTANFDELMAAAAAEAGENGDAEEQTN 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02788 131 Gene3D - 18 130 IPR036882 GO:0003676
Vimu11g02788 131 PANTHER DNA/RNA-BINDING PROTEIN ALBA 3 1 122 IPR014560 -
Vimu11g02788 131 FunFam Uncharacterized protein At2g34160 18 130 - -
Vimu11g02788 131 Pfam Alba 20 75 IPR002775 GO:0003676
Vimu11g02788 131 PIRSF UCP030333_Alba 1 131 IPR014560 -
Vimu11g02788 131 SUPERFAMILY AlbA-like 19 114 IPR036882 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02788 Vimu-Chr11 48063022 48064965 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02788 - - gmx:100527472 223.016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02788 11 48063022 48064965 Vimu11g02788 11 48063022 48064965 ECH
Vimu4g00170 4 1110056 1112538 Vimu11g02788 11 48063022 48064965 PCT