Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00113 ATGTCTGCTGCGGTGTGCGGAAGCAAGAGATCTTTGTTCGAAGAGCTTCCACCTTCTCCGCCAGTATCCAAGAGGCTCCGCTGTTCATCTTCCCCAATTCGCCTCTCTCTTCCTTCCCTCATCGATCACCTTCGCCCTCTCTTCCCTCATATGGATGATCAGATCCTCGAGAAAGCCCTCCAAGAATGTGGTAATGACCTAGATGCTGCCATCAAGAGCCTCCACGGCCTCCGTCTGGGATCTACCGATGATAATTCTCAAGCTGCTCCTCAACCCCACCCTGATGTCGTCCACACAGGAGCTTTGGAAGAGAATGAAGATGCTGCATCTGCTTCTGGGGGTCAGCCGGCTGCAGACAACTTTCCTGCTGATGGAGCTGAGTGGATTGACTTGTTTGTCAGAGAGATGACATGTGCTACCAGCGTTGATGATGCCAGAGCTCGAGCTGCTAGATTGCTAGAGGTTTTAGAGAAATCTATTAGTGCACACGCCAGTTCCGGGGCAACAACTGCCCTTCAAAGGTTTTGGTTGTTGTCACTCATGAATGGTTTTCACTCTCAGGAAAATTTGATGCTGAAGGAGCAAATTGAAGCCCTGACCAAGGAGAAAAATTGTTTTAAAAGTGCTTTTAGAATCCAGCTTGAACGTCTTTCCGATTACGATAGTAAAACCCAAGAGTTGCAGCAGTTGAAGCAGTTGGTGTCTCAGTATCAGGAGCAGATCAGAACTCTTGAGGTGAATAACTATGCTTTGCGGATGCATTTGAATCAGGCACAACAGTACAACTCTTTTCCTGGGCGTTTCCCTCCTGATGCCTTCTAG 822 0.4842 MSAAVCGSKRSLFEELPPSPPVSKRLRCSSSPIRLSLPSLIDHLRPLFPHMDDQILEKALQECGNDLDAAIKSLHGLRLGSTDDNSQAAPQPHPDVVHTGALEENEDAASASGGQPAADNFPADGAEWIDLFVREMTCATSVDDARARAARLLEVLEKSISAHASSGATTALQRFWLLSLMNGFHSQENLMLKEQIEALTKEKNCFKSAFRIQLERLSDYDSKTQELQQLKQLVSQYQEQIRTLEVNNYALRMHLNQAQQYNSFPGRFPPDAF 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00113 273 Gene3D - 29 84 - -
Vimu4g00113 273 CDD CUE 39 74 - -
Vimu4g00113 273 ProSiteProfiles CUE domain profile. 36 79 IPR003892 GO:0043130
Vimu4g00113 273 SUPERFAMILY UBA-like 37 83 IPR009060 GO:0005515
Vimu4g00113 273 PANTHER UBIQUITIN SYSTEM COMPONENT CUE PROTEIN 1 273 - -
Vimu4g00113 273 Coils Coil 220 247 - -
Vimu4g00113 273 Pfam CUE domain 39 73 IPR003892 GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00113 Vimu-Chr4 676204 678067 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00113 - - vum:124832196 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00113 4 676204 678067 Vimu4g00113 4 676204 678067 ECH
Vimu4g00113 4 676204 678067 Vimu11g02765 11 47930629 47934540 PCT