Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02765 ATGTCTGCTGCTGTGTGCGGAAGCAAGAGATCTTTCTTCGAAGAGCTTCCTCCTTCTCCGCCACTCTCCAAGAGGCTCCGTTGTTCCTCTTCGCCGATTCGCTTCCCTCCCCTCTCTCTCATCGACCAACTTCGCCCGCTCTTTCCGCACATGGACGACCTGGTTCTTGAGAGGGCTCTTCAGGAATGTGGAAATGATATTGATGCTGCCATCAAGAGGCTGAACGAGCTTTGTTTGGGAAATACAGATGGAAATGAAAATTCGGAAGGATCGGATGTTGTTAATTTGGTTGCAGGTAAATTGGAAGACAATGGAAATGCTTCTGTTCCTGAGGACCAGCCTACTTTGAACAACCACCTTCCTGCAGATGGAGCAGAATGGATTGACTTTTTTGTTAGGGAAATGATGGTTGCTACTAGTGTTGATGATGCTAGAGCCCGTGCTGCTAGAATGCTAGAAGTTCTAGAGAAATCAATCAGTGAAAGAGCAAGGGCTGAGGCAACTGATGCACTTCAAAAGGAACAGATCAATTGTATGATGTATGCTGTTGCCCAGGGATTGCTGAACCGAAGTGGCAGTTGGGTGATATTGAGTGCTTTGAGATTGGAAAATTTGATGCTGAAAGAGCAAATCGAAGCATTGATTAAGGAGAAAAATTCTTTCAAAAATGCTTTTAGAATCCAGCATGAACGATCTGCTGATTACGAGGTTAAGAACCAAGAGTTGCAGCATTTAAAGCAATTGGTGTCTCAATATCAGGAGCAGATTAGAACTCTCGAGGTGAATAACTATGCTTTGGCAATGCATTTGAAGCAGGCTCAACAGAGCAACCCCTTTACTGGGCATTTCCCACCTGATATCTTCTAA 867 0.4464 MSAAVCGSKRSFFEELPPSPPLSKRLRCSSSPIRFPPLSLIDQLRPLFPHMDDLVLERALQECGNDIDAAIKRLNELCLGNTDGNENSEGSDVVNLVAGKLEDNGNASVPEDQPTLNNHLPADGAEWIDFFVREMMVATSVDDARARAARMLEVLEKSISERARAEATDALQKEQINCMMYAVAQGLLNRSGSWVILSALRLENLMLKEQIEALIKEKNSFKNAFRIQHERSADYEVKNQELQHLKQLVSQYQEQIRTLEVNNYALAMHLKQAQQSNPFTGHFPPDIF 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02765 288 Coils Coil 197 224 - -
Vimu11g02765 288 CDD CUE 39 74 - -
Vimu11g02765 288 Pfam CUE domain 40 76 IPR003892 GO:0043130
Vimu11g02765 288 Coils Coil 235 262 - -
Vimu11g02765 288 ProSiteProfiles CUE domain profile. 36 82 IPR003892 GO:0043130
Vimu11g02765 288 SUPERFAMILY UBA-like 40 83 IPR009060 GO:0005515
Vimu11g02765 288 Gene3D - 39 80 - -
Vimu11g02765 288 PANTHER UBIQUITIN SYSTEM COMPONENT CUE PROTEIN 1 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02765 Vimu-Chr11 47930629 47934540 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02765 - - gmx:100813137 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02765 11 47930629 47934540 Vimu11g02765 11 47930629 47934540 ECH
Vimu4g00113 4 676204 678067 Vimu11g02765 11 47930629 47934540 PCT