Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00108 ATGGAGTTAAATATCCTTGAGTCAGAAACACATCAAAATAGTAGGAGGAGAAAGAAATCTACTGTTTGGGAGCACTTCACTGTGAAAACTGATGGACCTGGATGTGCCAGGGCTTACTGTAAAAGATGCCAAAAGTCATTTGCTTATCTCAAAGATTCAAAACAATCTGGCACCAGTCATCTCAAGAGACACATTACTCTGGGAATCTGTCAGAAAAATAAAAAAATTCCGTGTTCCAAAACTGATGCAGATCCACCTAAGAAACGAGCAAGGGCAAAACCTTACATTGCTGCTATCTCATTTGATCAGGAGCGTTGCAACAGTAAGATGGCCAAAATGATTATTTTACATGACTATCCACTTCATATTGTAGAACACCAAGGTTTCATTGATTTTGTAAGGGCGCTGCAACCCCAGTTCAATCCACTGAGCCTTAATGCTATTCAAGGGGATTGTGTTGCTATGTACCTCAGAGAGAAGCAAAACCTGTTGAATCTTATTGATGGGATTCCTGGACGAGTCAACCTCACCTTGGACTTATGGACTTCAAACCATACATCAGCCTATGTTTTTCTTCGAGGTCACTTCATTGATGGTGATTGGAACTTACATCATCCTATTCTTAATGTATTCACGGTACCATTTCCTGATTCTGACGGTTCCTTAAATCAAGCTATAGTGAAATGCCTGAGCAATTGGCATTTAAAGGGTCGGCTATTTACTCTTGCACTTGATAAATTCTTCTCCACTGAGACTTTGATGGGAAATCTGAGAAGTCTTCTCTCTGTTAATAACCCTGTGATTCTGAATGGTCAGTTTTTAAGTCAGAACTGTTATGCTCGTGTACTTAGCCGCCTTGCATTAGATGCGTTATCAGCTATGAGAGAAACAATCAATAAAGTTCGCGAGAGTGTGAAGTATGTGAAATCTTCTAAATCAAATGAAGCAAATTTTTTGAAGCTGAGGCAACAACTTCAAGTCCCTAGTACAATGGACCTTGTTATCGATGACCAAAATAAATGGGACACAATTTACCATATGCTTGTAGCTGCTTGCAAATTAAAGCAAGTTTTTGTTTGCTTTGACGCCTTTGATCCTGATTTCAGAATGACTTTAACAATGGATGACTGGAAGCACGTGGAAACTCTATGTAGATATTTGAATTACTTGTATGATGCAGCTAACATTTTAACTGTTCAACCGTACCCAACTGCAAATGTATTTTTTCTTGAAGTGTCAAAACTTCAGGTGGTGTTGACTTGTGCAGCCTTAAGCCAGGATCCTTTCTGCAGGTGTTTGATTATGCCTTTGCAAAAGAATTTTGATCAATATTGGAGAGAAAGCTGTGTCATCCTGGCTGCTGCTGTAGCCATGGATCCAAGATATAAAATGAAATTCGTGGAGTCCACCTTCGCTAAGATATTTGGTGAGAATGCTGAGTACTGGACAAGATTTGTTGAGGAGGGTCTTAATGAACTGTTCCTTGAATATAATATCATACAAGTGCTTCCTTTTACAGCAACAAATGATAATGAAGGGAATGAGACTATGATAAAGACTGAGTCATTTGAAGAAGGGGCATTTGATGCATCTCTTTTTACGGGTGATGATGGACTGTCTGACATCGAATTTTATATATCTGATCTAACATGTAACCAGCAATATAAGTCTGAATTGGATGAGTATCTTGAAGAGCCTCTTGAGACAAGAGTACAAGAATTTGATGTTCTGAGCTGGTGGAGAATAAACGGATTGAAGTACCCAACATTGTCTAGACTAGCATCAGATATTTTGTGTGTGCCAGTATCCACCCTCTCGGCAGATGCTGTTTTTGATACAGAAATTAGAAAAATGGATAACTACCGGAGTTCATTAGACTCCTTGACTCTTGAGGCCCTTATTTGTACCAAGGACTGGTTCCAGGATAAATCATTACCCATCAGTGTTCCTAATACACTTGTCAAAGTTGAGTGTTAG 1977 0.391 MELNILESETHQNSRRRKKSTVWEHFTVKTDGPGCARAYCKRCQKSFAYLKDSKQSGTSHLKRHITLGICQKNKKIPCSKTDADPPKKRARAKPYIAAISFDQERCNSKMAKMIILHDYPLHIVEHQGFIDFVRALQPQFNPLSLNAIQGDCVAMYLREKQNLLNLIDGIPGRVNLTLDLWTSNHTSAYVFLRGHFIDGDWNLHHPILNVFTVPFPDSDGSLNQAIVKCLSNWHLKGRLFTLALDKFFSTETLMGNLRSLLSVNNPVILNGQFLSQNCYARVLSRLALDALSAMRETINKVRESVKYVKSSKSNEANFLKLRQQLQVPSTMDLVIDDQNKWDTIYHMLVAACKLKQVFVCFDAFDPDFRMTLTMDDWKHVETLCRYLNYLYDAANILTVQPYPTANVFFLEVSKLQVVLTCAALSQDPFCRCLIMPLQKNFDQYWRESCVILAAAVAMDPRYKMKFVESTFAKIFGENAEYWTRFVEEGLNELFLEYNIIQVLPFTATNDNEGNETMIKTESFEEGAFDASLFTGDDGLSDIEFYISDLTCNQQYKSELDEYLEEPLETRVQEFDVLSWWRINGLKYPTLSRLASDILCVPVSTLSADAVFDTEIRKMDNYRSSLDSLTLEALICTKDWFQDKSLPISVPNTLVKVEC 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00108 658 SMART bed5 17 73 - -
Vimu4g00108 658 MobiDBLite consensus disorder prediction 1 20 - -
Vimu4g00108 658 SUPERFAMILY beta-beta-alpha zinc fingers 20 67 IPR036236 -
Vimu4g00108 658 Pfam hAT family C-terminal dimerisation region 558 640 IPR008906 GO:0046983
Vimu4g00108 658 ProSiteProfiles Zinc finger BED-type profile. 17 77 IPR003656 GO:0003677
Vimu4g00108 658 PANTHER BED FINGER-RELATED 150 647 IPR045259 -
Vimu4g00108 658 Pfam Domain of unknown function (DUF4413) 400 497 IPR025525 GO:0003677
Vimu4g00108 658 SUPERFAMILY Ribonuclease H-like 167 641 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00108 Vimu-Chr4 648431 650407 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00108 - - gmx:106795554 1178.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00108 4 648431 650407 Vimu4g00108 4 648431 650407 ECH
Vimu4g00108 4 648431 650407 Vimu11g02762 11 47914975 47916957 PCT