Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02762 ATGGAGCTTGATGCTCATGTTACCCCCGATAATAATGATGTGATACCTTATTCAGGAACGCAACCCAATAAGCGGATGAGAAAAAAGTCTATGGTGTGGGAATACTTCACAGTAGAAGCTGTTGGAGCTGGATGTACCAGGGCTTACTGTAACCAATGCAAAAAGTCGTTTTCTTATATAACTGATTCAAAACTAGCTGGTACAAGCCATCTGAAACGACACATTTCGATGGGAATCTGTCAAGTACTTCGGGAGAAAAACCAACAAATCTCATATCCCAAAACCGGTGGTTCTCAATATAATGCCAATACTCCCAAGAAACGGCCAAGAGAGAATTCTAGGTTTACTACTGGTATCTCATTTGATCAGGAGCGTTGCAACCATGATGTTGCCAAAATGATAATTTTACATGATTATCCTCTTCATATTGTGAAGCAACAGGGTTTCATTGATTTTCTGCGGATTCTTCAACCCCAGTTCAATCCATCATGTCTAAATTCTATTGAAAGGGATTGTATTGCTATTTACCTCGGGAAAAAGCAAAATATGTTGAATGTCATTAATGTGATTCCTGGACAAGTCAACCTGACATTGGAATTGTGGACTTCGAACCAGGCAATGGGCTATGTTTTTGTTCGAGGACACTTCATTGATAATGATTGGAACTTGCATCGTCCTATTCTCAATGTCGTTACAGTACCATTTCCTGGTTCTGAAGATTCTTTAAATCAAACTTTAGTGACATGCTTATCCGATTGGCATTTGGAGGGTCGCCTTGCAGCTGATGCACTATGGGCAATGAGAGAAACTATTAGCAAGGTTCGCGATAGTGTAAAGCATGTGAAGTCTTCAGAAACCCATAAAGAGAAGTTTATTGACTTGAAGCAACATTTACAAGTACCTAGTATGGTGAATCTTTCAATTGATGACCCGTGTAAATGGGACACAACTTATCATATGCTTGTAGCTGCCTGTGAATTAAAGGAAATCTTCATCTGCCTTGATACCACTGATTCTGATTACAGAACGACTCTAACAATGGATGACTGGAAGATGGTTGAAACTCTCTGCACATATTTGAAGTATTTGTATGATGCAGCCAAAATTCTGACACAGCAACCGTACCCAACTTCAAATTTATTTTTTGCTGAAGTGTCAAAAATTCAGGTGGAGCTGACACAAAGCTTTGACCAATATTGGAGAGAAAGCTGCATCATCTTGGCAATTGCTGTAGCTATGGACCCAAGGCATAAAATGAAACTTGTGGAATTTACCTTTGCCAAGACATTTGGTGAGAATGCTGGGGCCTGGATAAAGATAGTTGAGGATGGTCTTCGTGATCTATTCATTGAATATAGCACCCAAATGTTTCTTAAAGCAACAAATGATGATGATGGGGATGACATTATGATAAAAGAAACATGTCAAGAAGATTCTATTGACTGCTCTCTTTTTGTTGATGATGATGGTCTTTCGGATTATGAATTTTATATATCTGATTTTACTGGTAACCCTCAATTTAAATCAGAATTGGAAGAGTATCTGGAAGAGCCTCTGCTGACCAGTGTAGAGGAATTTGATATTCTGAGCTGGTGGAGAGTAAATGGATTGAAATACCCGACATTGTCTAGAATAGCATCTGATATTTTGTCTTTACCAGTTTCCACTCTGTCTGCAGATTCTGTTTTTGACACCCAGATTAGAAAAATGGATAGCTACCGTAGTTCTTTAAGCTCCCTCACTCTTGAAGCCCTTATTTGTGCCAAGGACTGGTTCCAGTCAGAATGA 1788 0.3909 MELDAHVTPDNNDVIPYSGTQPNKRMRKKSMVWEYFTVEAVGAGCTRAYCNQCKKSFSYITDSKLAGTSHLKRHISMGICQVLREKNQQISYPKTGGSQYNANTPKKRPRENSRFTTGISFDQERCNHDVAKMIILHDYPLHIVKQQGFIDFLRILQPQFNPSCLNSIERDCIAIYLGKKQNMLNVINVIPGQVNLTLELWTSNQAMGYVFVRGHFIDNDWNLHRPILNVVTVPFPGSEDSLNQTLVTCLSDWHLEGRLAADALWAMRETISKVRDSVKHVKSSETHKEKFIDLKQHLQVPSMVNLSIDDPCKWDTTYHMLVAACELKEIFICLDTTDSDYRTTLTMDDWKMVETLCTYLKYLYDAAKILTQQPYPTSNLFFAEVSKIQVELTQSFDQYWRESCIILAIAVAMDPRHKMKLVEFTFAKTFGENAGAWIKIVEDGLRDLFIEYSTQMFLKATNDDDGDDIMIKETCQEDSIDCSLFVDDDGLSDYEFYISDFTGNPQFKSELEEYLEEPLLTSVEEFDILSWWRVNGLKYPTLSRIASDILSLPVSTLSADSVFDTQIRKMDSYRSSLSSLTLEALICAKDWFQSE 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02762 595 PANTHER BED FINGER-RELATED 171 594 IPR045259 -
Vimu11g02762 595 MobiDBLite consensus disorder prediction 1 21 - -
Vimu11g02762 595 ProSiteProfiles Zinc finger BED-type profile. 27 87 IPR003656 GO:0003677
Vimu11g02762 595 Pfam hAT family C-terminal dimerisation region 510 592 IPR008906 GO:0046983
Vimu11g02762 595 MobiDBLite consensus disorder prediction 92 113 - -
Vimu11g02762 595 SUPERFAMILY Ribonuclease H-like 191 593 IPR012337 -
Vimu11g02762 595 Pfam Domain of unknown function (DUF4413) 385 452 IPR025525 GO:0003677
Vimu11g02762 595 MobiDBLite consensus disorder prediction 92 106 - -
Vimu11g02762 595 SMART bed5 27 83 - -
Vimu11g02762 595 SUPERFAMILY beta-beta-alpha zinc fingers 30 85 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02762 Vimu-Chr11 47914975 47916957 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02762 - - vun:114166194 1106.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02762 11 47914975 47916957 Vimu11g02762 11 47914975 47916957 ECH
Vimu4g00108 4 648431 650407 Vimu11g02762 11 47914975 47916957 PCT