Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00094 ATGAACTGTATCGCCGTATCACGTGATACAATAATTGCTCACTTTGGTTCTTGTCTAATCGAAGGCGAGGCAGTTACGATGTCATCTCTCAGCAGGGAGTTGGTGTTCTTAATCCTTCAGTTTCTGGATGAGGAAAAGTTCAAAGAAACTGTTCACAAACTGGAGCAGGAGTCTGGGTTTTTCTTTAACATGAAATATTTTGAGGATGAAGTGCACAATGGTAATTGGGATGAGGTTGAGAGGTACCTCTCTGGTTTCACCAAAGTAGATGACAATAGGTATTCAATGAAGATATTTTTTGAGATAAGGAAGCAGAAGTACTTGGAGGCATTAGATAAGCATGATCGGTCCAAGGCTGTAGAAATATTAGTGAAGGATTTAAAAGTCTTTGCCACATTTAACGAAGAACTGTTTAAGGAAATCACACAGCTTTTGACATTGGAGAATTTTAGGGAAAACGAGCAGTTGTCCAAGTATGGTGATACGAAGTCTGCAAGGGCAATCATGTTGGTTGAGCTCAAAAAGTTGATTGAGGCTAATCCTTTATTTCGCGATAAATTGCAATTTCCCAACCTTAAAAACTCAAGGTTACGAACTCTCATCAATCAAAGGCCTGAGATTGTCTACATAAAAGTTGCAATTGAAGGAGGTCATCTGCCGCATTCCATATTTACATTTCTGGGAGCTTCTGCATATAGATGGGCTATTGCATTTGCTTTTGAACTCTTGAATTGGCAGCATCAACTTTGTAAGAACCCCCGGCCAAATCCTGATATAAAAACACTTTTCGTGGATCACTCATGTGGACAACCTAACGGTGCACGGGCTCCATCCCCTGCTAGCAATCCACTACTAGGATCATTACCGAAGGCTGGAGGATTTCCTCCACTTGGTGCACATGGGCCTTTTCAACCTACTCCAGCACCGGTGCCAACACCCCTGGCTGGTTGGATGTCAAATCCAACAACTGTGGCACATCCTGCAGTCTCCGGTGGAGCTATAGGTCTTGGTGCACCGTCGATCCCGGCTGCTTTGAAGCACCCTAGGACCCCTCCAACTAATCCTTCTGTTGATTATCCGTCTGGTGATTCAGATCATGTTTCTAAGAGAACAAGACCAATGGGAATATCAGATGAGGTAAATCTGCCAGTCAATGTTCTGTCAGCTACATTCCCTGGTCATGGTCATGGTCAGGCTTTTAATGCACCTGACGACTTGCCAAAGACTGTCATGCGAACTCTGAACCAAGGCTCATCTCCTATGAGCATGGATTTTCATCCAGTTCAACAGACACTGCTCCTTGTTGGCACGAATGTGGGGGACATTGCTTTGTGGGAAGTGGGCTCTAGGGAGCGGTTGCTCATGAGGAACTTTAAAGTGTGGGATCTTAGTGCTTGTTCAATGCCCTTTCAGGCTGCTCTTGTCAAAGATCCAGGTGTTTCTGTCAACCGTGTGATTTGGAGTCCTGATGGGGCTTTATTTGGAGTTGCTTACTCAAGGCACATTGTTCAGATATACTCTTACCATGGCGGGGATGAAGTCCGACAGCATTTGGAGATTGATGCTCATGTCGGTGGAGTTAATGATTTAGCATTTTCACACCCGAATAAGCAGTTATGTGTCATTACCTGTGGTGATGATAAGACCATTAAGGTTTGGGATGCTGCTTCAGGAGCAAAACAGTATACCTTTGAAGGTCACGAGGCTCCAGTTTATTCTGTCTGTCCACATTATAAAGAAAACATTCAGTTCATCTTTTCCACGGCATTAGATGGAAAGATAAAAGCATGGTTGTATGATAATTTGGGATCTCGTGTTGATTATGAAGCTCCTGGTCGTTGGTGTACAACCATGGCCTACAGTGCTGATGGTACAAGACTTTTTTCATGTGGGACGAGTAAGGAGGGGGAATCCTCTATCGTTGAGTGGAATGAAAGTGAAGGAGCGGTGAAAAGGACTTATCAAGGATTTCGGAAACGATCTTTGGGTGTTGTACAATTTGATACAACCAAAAATCGATATTTGGCTGCAGGTGATGATTTCTCCATTAAATTTTGGGACATGGACAATATTCAGCTTTTGACAACTGTTGATGCTGATGGGGGTCTCCCTGCAAGCCCACGAATCCGTTTTAATAAGGATGGAGCTCTTTTAGCGGTTTCTGCAAATGACAATGGAATCAAAATCTTAGCCAATGCAGATGGTATTCGTGTGTTACGTACACTAGAAAATTCTTTGTACGATACATCTAGAACGTCAGAAGCCATGACAAAGCCTGCAATAAATCCAATTTCAGCTGCTGCTGCCGCTGCTGCAGCAACCAGTGCTGCACTTGCAGAGAGGGCCTCATCTGTTGTAGCTATTACTGCAATGAATGGGGATGCTCGAAACTTGGGTGATGTTAAACCTAGAATTAGTGAAGAATCCAATGATAAATCAAAGATATGGAAGCTCACTGAAATCAGTGAACCATCTCAATGTAGATCCTTGAAGCTACCCGAGAATGTTAGAGTGAACAAGATATCAAGGTTGATATATACTAATTCAGGTAATGCTATTCTAGCATTAGCTTCAAATGCCATTCATCTGCTCTGGAAATGGCAGCGAAGTGATCGTAATTCAACTGGCAAGGCCACTGCCAATGTGCAGCCACAGTTGTGGCAACCTTCTAGTGGCATCCTGATGACTAATGACATTACTGATAGCAATACTGAGGATGCCGTTCCCTGCTTTGCTCTGTCAAAAAATGATTCTTATGTAATGTCAGCATCAGGAGGGAAGATTTCTCTGTTCAATATGATGACTTTTAAGGTTAAAAGTAAACTCAAAGGTCATACTAAAAGAATAACTGGTCTTGCTTTTTCTCATGTATTGAACGTGCTAGTTTCATCTGGGGCAGATGCTCAGCTTTGTGTGTGGAATACTGATGGATGGGAAAAACAGAAATCTAGATTCTTGCAACTTCCTGCCGGGAGGACTCCACCAGCTCAGGCAGATACCCGTGTACAGTTTAATCAGGATCAGATCCGCTTCTTGGTTGTACATGAAACTCAGCTTGCCATTTATGAAGCAACAAAACTAGAATGTTTAAAGCAGTGGTTCCCACGAGAATCAGCGGCCCCAGTATCACATGCAACTTTCTCATGTGATAGCCAGCTCATATATGCCAGCTTTTTAGATGCAACAGTCTGTGTATTTAGTGCTTCAAACCTTAGATTACGTTGTCGAATCAATCCTTCTGCTTATCTTTCGGCCAGTGTCAGTTCTAATGTACAACCACTTGTTATTGCTGCACATCCTCAAGAACCAAATCAGTTTGCTGTAGGATTGTCAGATGGTGGAGTTCATGTCTTTGAGCCCCTTGAGTCTGAAGGCAAATGGGGTGTGCCTCCACCCAATGAGAATGGATCAACGAGCAATATGGCAGCTACTTCAGTTGGAGCTTCTTCGGATGAAGCTCAGAGATGA 3468 0.4322 MNCIAVSRDTIIAHFGSCLIEGEAVTMSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQRPEIVYIKVAIEGGHLPHSIFTFLGASAYRWAIAFAFELLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPASNPLLGSLPKAGGFPPLGAHGPFQPTPAPVPTPLAGWMSNPTTVAHPAVSGGAIGLGAPSIPAALKHPRTPPTNPSVDYPSGDSDHVSKRTRPMGISDEVNLPVNVLSATFPGHGHGQAFNAPDDLPKTVMRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIALWEVGSRERLLMRNFKVWDLSACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAASGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKEGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPASPRIRFNKDGALLAVSANDNGIKILANADGIRVLRTLENSLYDTSRTSEAMTKPAINPISAAAAAAAATSAALAERASSVVAITAMNGDARNLGDVKPRISEESNDKSKIWKLTEISEPSQCRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWQRSDRNSTGKATANVQPQLWQPSSGILMTNDITDSNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQLCVWNTDGWEKQKSRFLQLPAGRTPPAQADTRVQFNQDQIRFLVVHETQLAIYEATKLECLKQWFPRESAAPVSHATFSCDSQLIYASFLDATVCVFSASNLRLRCRINPSAYLSASVSSNVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPNENGSTSNMAATSVGASSDEAQR 1155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00094 1155 ProSiteProfiles Trp-Asp (WD) repeats profile. 942 983 IPR001680 GO:0005515
Vimu4g00094 1155 MobiDBLite consensus disorder prediction 1122 1155 - -
Vimu4g00094 1155 SUPERFAMILY WD40 repeat-like 414 730 IPR036322 GO:0005515
Vimu4g00094 1155 SMART WD40_4 1026 1067 IPR001680 GO:0005515
Vimu4g00094 1155 SMART WD40_4 407 446 IPR001680 GO:0005515
Vimu4g00094 1155 SMART WD40_4 601 644 IPR001680 GO:0005515
Vimu4g00094 1155 SMART WD40_4 935 974 IPR001680 GO:0005515
Vimu4g00094 1155 SMART WD40_4 468 507 IPR001680 GO:0005515
Vimu4g00094 1155 SMART WD40_4 557 598 IPR001680 GO:0005515
Vimu4g00094 1155 SMART WD40_4 647 687 IPR001680 GO:0005515
Vimu4g00094 1155 SMART WD40_4 513 554 IPR001680 GO:0005515
Vimu4g00094 1155 SMART WD40_4 1080 1119 IPR001680 GO:0005515
Vimu4g00094 1155 SMART WD40_4 895 932 IPR001680 GO:0005515
Vimu4g00094 1155 SMART WD40_4 690 731 IPR001680 GO:0005515
Vimu4g00094 1155 SMART ctlh 60 118 IPR006595 -
Vimu4g00094 1155 ProSitePatterns Trp-Asp (WD) repeats signature. 541 555 IPR019775 -
Vimu4g00094 1155 Gene3D - 609 757 IPR015943 GO:0005515
Vimu4g00094 1155 SUPERFAMILY WD40 repeat-like 841 1120 IPR036322 GO:0005515
Vimu4g00094 1155 MobiDBLite consensus disorder prediction 346 369 - -
Vimu4g00094 1155 Gene3D - 837 1127 IPR015943 GO:0005515
Vimu4g00094 1155 MobiDBLite consensus disorder prediction 1132 1155 - -
Vimu4g00094 1155 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 60 118 IPR006595 -
Vimu4g00094 1155 ProSiteProfiles Trp-Asp (WD) repeats profile. 520 563 IPR001680 GO:0005515
Vimu4g00094 1155 Coils Coil 1151 1155 - -
Vimu4g00094 1155 ProSiteProfiles LIS1 homology (LisH) motif profile. 30 62 IPR006594 GO:0005515
Vimu4g00094 1155 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 937 1139 IPR027728 GO:0006355
Vimu4g00094 1155 ProSiteProfiles Trp-Asp (WD) repeats profile. 665 696 IPR001680 GO:0005515
Vimu4g00094 1155 SMART Lish 30 62 IPR006594 GO:0005515
Vimu4g00094 1155 FunFam Topless-related protein 1 387 605 - -
Vimu4g00094 1155 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 942 974 - -
Vimu4g00094 1155 Gene3D - 394 608 IPR015943 GO:0005515
Vimu4g00094 1155 Pfam WD domain, G-beta repeat 520 554 IPR001680 GO:0005515
Vimu4g00094 1155 Pfam WD domain, G-beta repeat 940 974 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00094 Vimu-Chr4 532367 551772 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00094 518 715 Miscellaneous Gene Families AT5G08390 23.645 1.87e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00094 - - gmx:100790282 2063.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02753 11 47837991 47845464 Vimu4g00094 4 532367 551772 ECH
Vimu4g00094 4 532367 551772 Vimu4g00094 4 532367 551772 ECH
Vimu11g02753 11 47837991 47845464 Vimu4g00094 4 532367 551772 PCT