Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02753 ATGTCTTCTCTTAGTAGGGAATTGGTGTTCTTGATCTTGCAGTTTCTCGATGAGGAAAAGTTCAAAGAGACTGTGCACAAGCTTGAGCAGGAATCAGGGTTTTTCTTTAACATGAAATATTTTGAGGATGAAGTGCACAATGGGAATTGGGACGAGGTGGAGAAATACCTCTCTGGTTTCACTAAGGTGGATGATAATAGGTATTCTATGAAGATATTTTTTGAGATAAGGAAGCAGAAGTATCTGGAGGCTTTAGATAAGCATGACCGGTCTAAGGCAGTAGAAATATTAGTGAAAGATTTGAAAGTGTTTGCTACTTTTAATGAAGAATTGTTCAAGGAAATCACACAGCTTCTGACATTGGAAAACTTTAGGGAGAATGAACAACTGTCTAAGTATGGCGATACAAAGTCTGCACGAGCAATAATGTTGGTTGAGCTCAAAAAGCTCATTGAAGCAAATCCTTTATTCCGTGACAAATTGCAATTTCCCAACCTTAAAAACTCAAGGTTACGGACTCTAATCAATCAAAGCCTAAATTGGCAACATCAACTTTGCAAGAACCCACGGCCAAATCCTGATATAAAAACACTTTTTGTGGATCATTCATGTGGACAACCAAATGGTGCACGAGCTCCTTCACCTGCTAATAATCCGCTACTAGGCTCATTACCAAAGGCTGGAGGATTTCCTCCACTTGGTGCACATGGGCCTTTTCAACCTACTCCAGCACCAGTGCCAACACCCCTGGCTGGTTGGATGTCGAATCCAACCACTGTAGCACATGCTGCGGTTTCTGGAGGTGGAGCTATAGGTCTTGGTGCTCCGTCGATCCCTGCTGCTTTGAAGCATCCTAGGACTCCCCCAACTAATCCTTCGGTTGACTATCCATCTGGAGACTCAGACCATGTTGCTAAGAGAACAAGGCCAATTGGAATTTCGGATGAGGTGAATCTACCTGTCAATGTGTTATCAGCAACATTCCCAGGTCATGGTCAACACAGTCAAGCTTTTAACGCACCTGATGACATACCCAAGGCTGTTGTGCGGACTCTTAATCAGGGGTCAGCTCCTATGAGCATGGACTTTCATCCAGTTCAGCAATCTTTACTTCTTGTTGGTACAAATGTGGGGGACATTGCTTTGTGGGAGGTGGGTTCTAGGGAGCGATTGGTTTCAAGGAATTTCAAAGTTTGGGATCTTAGTGCATGTTCAATGCCATTTCAGGCTGCTCTTGTTAAAGATCCGGGTGTTTCTGTCAACCGTGTGATTTGGAGTCCTGATGGTGCTTTATTTGGAGTTGCTTACTCAAGGCACATTGTTCAGATATACGCTTACCAAGGTGGGGATGAAATACGACAGCATTTGGAGATTGATGCTCATGTTGGTGGAGTAAACGATCTAGCATTCTCCCACCCAAATAAGCAACTATGCGTGATAACTTGTGGTGATGATAAGACCATTAGGGTATGGGATGCTGCTTCGGGTGCAAAGCAGTATACATTTGAAGGTCATGAGGCTCCTGTTTATTCTGTCTGCCCACATTACAAAGAAAACATTCAGTTCATCTTTTCAACAGCATTAGATGGAAAAATAAAAGCATGGCTGTATGACAATTTAGGATCCCGTGTTGATTATGAAGCTCCTGGTCGTTGGTGCACTACCATGGCTTATAGTGCTGATGGTACAAGGCTCTTTTCATGTGGGACTAGCAAAGATGGAGAGTCCTCGATTGTTGAGTGGAATGAGAGTGAAGGAGCTGTGAAAAGAACTTATCAAGGATTTCGTAAGCGATCTTTGGGTGTTGTGCAATTTGATACTACCAAAAATCGATTTTTGGCTGCTGGTGATGATTTCTCCATCAAATTCTGGGATATGGATAATGTTCAGCTTTTGACAACTGTTGATGCTGATGGGGGTCTTCCTGCAAGCCCACGTATTCGTTTCAACAAGGATGGAATACTTTTAGCTGTCTCCGCAAATGACAATGGAATCAAAATTTTGGCCAATGGGGATGGCATACGTTTGTTGCGCACATTAGAGAATTCTTTGTATGATGCTCCAAGAGCATCAGAAGCCTTGACAAAGCCTACAATTAATCCAATTTCTGCTGCTGCTGCCGCAGCTGCTGCAACTAGTGCTGCACTGGCAGAGAGGGCTTCATCTGTAGTAGCTATTACTGGAATGAATGGGGATACCAGAAACATGGGTGATGTTAAACCCAGAATAAGTGAAGAATCAAATGACAAGTCAAAGGTATGGAAGCTCACTGAAATCAACGAACAATCTCAATGTAGATCCTTGAAGCTACCAGAGAATGTAAGAGTTACTAAGATATCAAGGTTGATATATACAAATTCGGGTAATGCTATTCTTGCATTAGCATCAAATGCTATTCACCTGCTGTGGAAATGGCAGCGAAATGAGCGCAATTCAACTGGCAAGGCCACTGCTACCTTGCAACCTCAGTTGTGGCAACCTTCTAGTGGCATCCTGATGACCAATGACATTGCTGATAGCAATCCTGAGGATGCTGTACCCTGCTTTGCATTGTCCAAAAATGATTCATACGTAATGTCTGCATCAGGAGGGAAGATATCTCTGTTCAATATGATGACCTTTAAGACTATGACAACGTTCATGCCTCCACCACCTGCGGCAACCTTTCTTGCTTTCCATCCTCAGGATAACAATATTATTGCTATAGGCATGGATGACTCCTCTATTCAAATATACAATGTCCGTGTTGACGAGGTTAAAAGTAAACTCAAAGGCCATACTAAAAGAATTACTGGTCTTGCTTTCTCTCATGTATTGAATGTATTAGTTTCATCTGGAGCAGATGCTCAGATTTGTGTTTGGAACACGGATGGATGGGAAAAGCAGAAGTCTAGATTCTTGCAGCTTCCTCCTGGGAGGACACCATCGGCACAGTCAGATACCCGTGTACAGTTTCATCAAGATCAAATACAGTTCCTGGTTGTACATGAAACTCAGCTTGCCATTTATGAAGCAACAAAACTAGAAGGTCTAAAGCAGTATTGCCCGCGAGATTCATCTGCTCCAATATCGCATGCAACATTCTCGTGCGATAGCCAGCTTATATATGCCAGCTTTTTAGACGCAACAATCTGTGTATTTAGTGCTTCAAATCTCAGATTACGTTGTCGTATCAATCCTTCTGCATATCTTCCTGCAAGTGTCAGTTCCAACGTACAACCACTTGTAATTGCGGCTCACCCACAAGAGCCAAATCAGTTTGCTGTAGGACTGTCGGATGGTGGAGTTCATGTTTTTGAACCCCTCGAGTCCGAAGGCAAGTGGGGTGTGCCTCCTCCGATTGAGAATGGGTCAGCAAGCAATGTTGCAGCTACTTCTGTTGGACCTTCTTCAGATCAAGCTCAAAGATGA 3411 0.4313 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQPTPAPVPTPLAGWMSNPTTVAHAAVSGGGAIGLGAPSIPAALKHPRTPPTNPSVDYPSGDSDHVAKRTRPIGISDEVNLPVNVLSATFPGHGQHSQAFNAPDDIPKAVVRTLNQGSAPMSMDFHPVQQSLLLVGTNVGDIALWEVGSRERLVSRNFKVWDLSACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYAYQGGDEIRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIRVWDAASGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGILLAVSANDNGIKILANGDGIRLLRTLENSLYDAPRASEALTKPTINPISAAAAAAAATSAALAERASSVVAITGMNGDTRNMGDVKPRISEESNDKSKVWKLTEINEQSQCRSLKLPENVRVTKISRLIYTNSGNAILALASNAIHLLWKWQRNERNSTGKATATLQPQLWQPSSGILMTNDIADSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKSRFLQLPPGRTPSAQSDTRVQFHQDQIQFLVVHETQLAIYEATKLEGLKQYCPRDSSAPISHATFSCDSQLIYASFLDATICVFSASNLRLRCRINPSAYLPASVSSNVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPIENGSASNVAATSVGPSSDQAQR 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02753 1136 SMART WD40_4 585 625 IPR001680 GO:0005515
Vimu11g02753 1136 SMART WD40_4 495 536 IPR001680 GO:0005515
Vimu11g02753 1136 SMART WD40_4 916 955 IPR001680 GO:0005515
Vimu11g02753 1136 SMART WD40_4 1061 1100 IPR001680 GO:0005515
Vimu11g02753 1136 SMART WD40_4 451 492 IPR001680 GO:0005515
Vimu11g02753 1136 SMART WD40_4 873 913 IPR001680 GO:0005515
Vimu11g02753 1136 SMART WD40_4 345 384 IPR001680 GO:0005515
Vimu11g02753 1136 SMART WD40_4 1009 1048 IPR001680 GO:0005515
Vimu11g02753 1136 SMART WD40_4 406 445 IPR001680 GO:0005515
Vimu11g02753 1136 SMART WD40_4 833 870 IPR001680 GO:0005515
Vimu11g02753 1136 SMART WD40_4 539 582 IPR001680 GO:0005515
Vimu11g02753 1136 SUPERFAMILY WD40 repeat-like 349 448 IPR036322 GO:0005515
Vimu11g02753 1136 Pfam WD domain, G-beta repeat 922 955 IPR001680 GO:0005515
Vimu11g02753 1136 Pfam WD domain, G-beta repeat 458 492 IPR001680 GO:0005515
Vimu11g02753 1136 Gene3D - 546 687 IPR015943 GO:0005515
Vimu11g02753 1136 MobiDBLite consensus disorder prediction 1118 1136 - -
Vimu11g02753 1136 SMART Lish 4 36 IPR006594 GO:0005515
Vimu11g02753 1136 FunFam Topless-related protein 3 742 976 - -
Vimu11g02753 1136 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Vimu11g02753 1136 ProSiteProfiles Trp-Asp (WD) repeats profile. 458 501 IPR001680 GO:0005515
Vimu11g02753 1136 ProSiteProfiles Trp-Asp (WD) repeats profile. 923 964 IPR001680 GO:0005515
Vimu11g02753 1136 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1118 IPR027728 GO:0006355
Vimu11g02753 1136 MobiDBLite consensus disorder prediction 285 304 - -
Vimu11g02753 1136 Gene3D - 322 545 IPR015943 GO:0005515
Vimu11g02753 1136 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Vimu11g02753 1136 ProSitePatterns Trp-Asp (WD) repeats signature. 479 493 IPR019775 -
Vimu11g02753 1136 ProSiteProfiles Trp-Asp (WD) repeats profile. 603 634 IPR001680 GO:0005515
Vimu11g02753 1136 SUPERFAMILY Nucleoporin domain 984 1111 - -
Vimu11g02753 1136 Gene3D - 812 1101 IPR015943 GO:0005515
Vimu11g02753 1136 SMART ctlh 34 92 IPR006595 -
Vimu11g02753 1136 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 423 960 IPR011047 -
Vimu11g02753 1136 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 923 955 - -
Vimu11g02753 1136 MobiDBLite consensus disorder prediction 1107 1136 - -
Vimu11g02753 1136 FunFam Topless-related protein 1 324 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02753 Vimu-Chr11 47837991 47845464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02753 439 653 Miscellaneous Gene Families AT5G08390 23.636 6.08e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02753 - - gmx:100795759 2191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02753 11 47837991 47845464 Vimu4g00094 4 532367 551772 ECH
Vimu11g02753 11 47837991 47845464 Vimu11g02753 11 47837991 47845464 ECH
Vimu11g02753 11 47837991 47845464 Vimu4g00094 4 532367 551772 PCT