Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03370 ATGAAAGGCAAAGTGAAGAGTTTCAAACTGAAGTTGGGGATACCTGCATTTTTCTTCATATGCTCCCTTTTTGTCTTTGCTGGCTTCTTTGTACATCCTCTCCTCTTTCAGGATTTGGACGATGTGAGATCAAAGTCAAGAATACTCCAAGAATTTGAGAAGAAACTATATGAACCTGTTGAGCATGGTGAATCCGGGGAATCCTTTTTTGATTCAATCCCATTTCAGATTTTAAGTTGGAGACCGCGGGCGGTTTATTTTCCAAACTTTACTAGTGTGGAAGCATGTCAGCAAATAATTGAAATGGCAAAAGCAAAACTTGAACCATCAAAACTGGCTTTGCGGAAAGGAGAAACTGCTGACAGTACAAAAGACACTAGAACAAGTTCAGGCACATTTATCAGTGCATCAACAGACAAATCTGGCATTTTAGACATGTTAGAGAGGAAAATTGCTAAAGTTACAATGATTCCAAGGAGCCATGGGGAAAAATTCAATATATTGAAGTATGAGGCTGGTCAGAAATATGATTCTCATTACGATGCGTTCAACCCAGATGAATACGGCACTGTTATGGCTTCCTTTCTGTTATACCTATCAAATGTTGAAGCAGGAGGAGAAACAATGTTCCCTTATGAGGGTGGTTTGCATATTGATATGGATTATGATTACCGAAAATGCATTGGTTTGAAGGTTAAGCCACGACAGGGCGATGGACTTTTATTTTATTCACTGTTACCAAACGGGAGAATTGATAAGACTTCTCTTCATGGAAGTTGTCCAGTGATTAAGGGAGAGAAATGGGTGGCAACAAAGTGGATCGATGATGAAGAGCAATAG 840 0.394 MKGKVKSFKLKLGIPAFFFICSLFVFAGFFVHPLLFQDLDDVRSKSRILQEFEKKLYEPVEHGESGESFFDSIPFQILSWRPRAVYFPNFTSVEACQQIIEMAKAKLEPSKLALRKGETADSTKDTRTSSGTFISASTDKSGILDMLERKIAKVTMIPRSHGEKFNILKYEAGQKYDSHYDAFNPDEYGTVMASFLLYLSNVEAGGETMFPYEGGLHIDMDYDYRKCIGLKVKPRQGDGLLFYSLLPNGRIDKTSLHGSCPVIKGEKWVATKWIDDEEQ 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03370 279 SMART p4hc 82 275 IPR006620 GO:0005506|GO:0016705|GO:0031418
Vimu3g03370 279 FunFam Prolyl 4-hydroxylase 4 74 276 - -
Vimu3g03370 279 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 159 276 IPR005123 -
Vimu3g03370 279 Pfam 2OG-Fe(II) oxygenase superfamily 166 274 IPR044862 -
Vimu3g03370 279 PANTHER PROLYL 4-HYDROXYLASE ALPHA SUBUNIT 58 273 IPR045054 -
Vimu3g03370 279 Gene3D q2cbj1_9rhob like domain 75 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03370 Vimu-Chr3 47008434 47011129 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03370 K00472 - gmx:100813618 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03370 3 47008434 47011129 Vimu3g03370 3 47008434 47011129 ECH
Vimu7g02759 7 23214811 23221282 Vimu3g03370 3 47008434 47011129 PCT