Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03100 ATGGGGGCTGGTGTTTCTTCACCTGATAGAGCTGAAGACGAAGAAGGGTCTGGTTCTCATCCATCAATACCTGGTCTTGGTGATATCCCAGAGAGTTGCATCTCCTCCTTGCTCATCAACCTTGATCCACCAGATATATGCAAATTGGCAAGGGTTAATAGGGCCTTTCACCGAGCTTCCTCAGCTGATTTTGTATGGGAATCAAAGCTCCCACCAAGTTACAAATTTCTTGCTAATAAAGTTCTTGGGGAACAAAATATTGCCACTATGACAAAGAAAGAGATTTATGCAAAACTTAGCCTACCCAATCGTTTTGATGGCGGCGCCAAAGAAGTTTGGTTGGACAAATGTAGTGGACTGGTTTGTTTGTTCATGTCATCCAAGTCATTGAAGATTACAGGAATAGATGACAGAAGATACTGGAATTATATTCCGACCGAAGAATCCAGGTTCAAGAGTGTCGCATATCTACAACAAATGTGGTGGGTTGAAGTGGTAGGGGAGCTAGAGTTTGAATTCCCTGTGGGGAGTTACAGCTTAGTTTTCAGACTCCAATTGGGCAAGGCCTCAAAGAGATTGGGCCGCCGAGTCTGCAACGTTGATCAAGTTCATGGTTGGGACATCAAGCCCGTCCGATTCCAACTCTCCACATCGGACGGCCAGCATTCACTCTCAGAATGTTACTTGCATGGACCTGGGGAATGGGTCTACTATCATGTTGGAGATTTCGTGGTCGAAAAGCCCAATGAGCCGACAATTATGAAGTTCTCATTGGCCCAAATTGATTGTACTCACACCAAAGGTGGCCTCTGCGTGGATAGTGCCATCATCTGCCCCACGCTGTTGAGAGAAAGACTAGAATAA 864 0.4549 MGAGVSSPDRAEDEEGSGSHPSIPGLGDIPESCISSLLINLDPPDICKLARVNRAFHRASSADFVWESKLPPSYKFLANKVLGEQNIATMTKKEIYAKLSLPNRFDGGAKEVWLDKCSGLVCLFMSSKSLKITGIDDRRYWNYIPTEESRFKSVAYLQQMWWVEVVGELEFEFPVGSYSLVFRLQLGKASKRLGRRVCNVDQVHGWDIKPVRFQLSTSDGQHSLSECYLHGPGEWVYYHVGDFVVEKPNEPTIMKFSLAQIDCTHTKGGLCVDSAIICPTLLRERLE 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03100 287 ProSiteProfiles F-box domain profile. 23 69 IPR001810 GO:0005515
Vimu3g03100 287 SUPERFAMILY F-box domain 16 80 IPR036047 GO:0005515
Vimu3g03100 287 PANTHER F-BOX PROTEIN PP2-A15 18 284 - -
Vimu3g03100 287 Pfam Phloem protein 2 121 279 IPR025886 -
Vimu3g03100 287 MobiDBLite consensus disorder prediction 1 27 - -
Vimu3g03100 287 CDD F-box_AtSKIP3-like 26 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03100 Vimu-Chr3 44746400 44748863 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03100 - - gmx:100795463 531.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01981 8 25661307 25663983 Vimu3g03100 3 44746400 44748863 ECH
Vimu3g03100 3 44746400 44748863 Vimu3g03100 3 44746400 44748863 ECH
Vimu8g01981 8 25661307 25663983 Vimu3g03100 3 44746400 44748863 PCT