Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03087 ATGGGAAATTCGTTCGGGTGTTCGGCCTCCGGCGAGAGGCTGGTGTCGGCGGCGAGGGACGGCGACTTGGTGGAGGCGAAGATGCTTTTGAACTGTAACCCCTGTCTCTCCAAGTATTCAACATTCGGTGGCCTCAATTCCCCTCTTCATTTTGCAGCAGCCAAAGGCCACAACGAGATTGTGGCATTGCTGCTGGAGAATGGAGCTGATGTGAATTCCAGAAATTATTGTGGCCAGACGGCCCTGATGCAAGCTTGTAGATATGGGCATTGGGAGGTTGTACAGACACTTCTACTCTTCAGATGCAATGTTATGAGGGCTGATTATCTTAGTGGGAGGACAGCTCTTCACTTTGCAGCTGTGCATGGGCATGTAAGATGTATTAGACTTGTTGTGGCTGACTTTGTACCAAGTGCACCTTATCAAGCTATACATGCTTGCACAAATATTGACAAGGATGGTGGATCAAATGTGAAAGGAAAACATGAGCATAGTGCCCTGTCCAAGTTTGTAAATAAGACTGCTGATGGTGGTATCACTGCCCTTCACATGGCTGCGTTAAATGGATACTTTGATTGTGTACAACTTCTGCTTGATCTTAACGCCAATGTGTCTGCCGTGACATTTCATTACGGAACATCAATGGATTTAATCGGAGCTGGAAGTACTCCTTTGCATTATGCTGCTTGTGGAGGCAATTTAAAATGCTGTCAGGCAAGATTTGATTTAGCTTTGATTTCAATATTCCTAGTGCCTTTTCCTTTGAAACTGGAACTGATGATATTCTTTTCAGATCCTTGTTGCACGAGGTGGCTTCCTCTTGATATTGCTAGGATGTGGGGCCGTCATTGGCTTGAACAATTACTGGCACCCAGTTCTGATACCACAGTACCTACATTCTCTCATTCAAACTACTTGTCCTTGCCTCTCATGAGTGTGCTCAACATAGCTAGAGAGTATGGATTACAATCATCTACAACCTCCTCTGACGAGATTGACTTTTGTGCTGTATGTCTGGAGAGACCTTGTTCCGTGGCTGCTGAAGGGTGTGAGCATGAGCTTTGTGTAAGATGTGCGCTTTATCTTTGTTCAACAAACAATGTTTCTTCTGAAATGGTTGGCCCTCCGGGCTCTATCCCCTGCCCTCTTTGTAGACATGGAGTTGTCTCTTTTGTTAAGTTACCAGGTTCCCAAGCAAAAGAAAATAAGTTACACGTGTCTTTGGGCCTGTGTACCCCTTGCATGCTACATCCACGTGACCTAGATCAGCCATCCATCTCTCATACACCTGAGATCGGACGAAATCGTGTAGCTTCTGTTCCATCAGAAATACTCTGCCCCGTCACTTGTAGTCCATTTCCATCTATGGCAATTCCCCTATGTACCTGCAATGATGGTCCATGTCCATCATTTGAACCCCGAGAAGTAGAAACACGAGATGAATCACCTCATCACTCTCAAGCATCAACAATGGATCAGGATAAAATTGAAGGGCCAAGATTGGATAAAACAACTTGCTCTAGCATGTTTTGGGGTAGAAGAAGTTGCAGCAGGGAGCACCAATGCAATTCAGAGATAAATGCTTGA 1587 0.4524 MGNSFGCSASGERLVSAARDGDLVEAKMLLNCNPCLSKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVMRADYLSGRTALHFAAVHGHVRCIRLVVADFVPSAPYQAIHACTNIDKDGGSNVKGKHEHSALSKFVNKTADGGITALHMAALNGYFDCVQLLLDLNANVSAVTFHYGTSMDLIGAGSTPLHYAACGGNLKCCQARFDLALISIFLVPFPLKLELMIFFSDPCCTRWLPLDIARMWGRHWLEQLLAPSSDTTVPTFSHSNYLSLPLMSVLNIAREYGLQSSTTSSDEIDFCAVCLERPCSVAAEGCEHELCVRCALYLCSTNNVSSEMVGPPGSIPCPLCRHGVVSFVKLPGSQAKENKLHVSLGLCTPCMLHPRDLDQPSISHTPEIGRNRVASVPSEILCPVTCSPFPSMAIPLCTCNDGPCPSFEPREVETRDESPHHSQASTMDQDKIEGPRLDKTTCSSMFWGRRSCSREHQCNSEINA 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03087 528 ProSiteProfiles Ankyrin repeat region circular profile. 177 206 - -
Vimu3g03087 528 SUPERFAMILY Ankyrin repeat 14 238 IPR036770 -
Vimu3g03087 528 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Vimu3g03087 528 ProSitePatterns Zinc finger RING-type signature. 350 359 IPR017907 -
Vimu3g03087 528 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515
Vimu3g03087 528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 318 407 IPR013083 -
Vimu3g03087 528 FunFam E3 ubiquitin-protein ligase XBAT33 6 140 - -
Vimu3g03087 528 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Vimu3g03087 528 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED 12 289 - -
Vimu3g03087 528 Pfam Ankyrin repeats (many copies) 171 217 IPR002110 GO:0005515
Vimu3g03087 528 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Vimu3g03087 528 MobiDBLite consensus disorder prediction 473 499 - -
Vimu3g03087 528 Pfam Ankyrin repeats (3 copies) 49 132 IPR002110 GO:0005515
Vimu3g03087 528 SMART ANK_2a 111 141 IPR002110 GO:0005515
Vimu3g03087 528 SMART ANK_2a 177 206 IPR002110 GO:0005515
Vimu3g03087 528 SMART ANK_2a 77 106 IPR002110 GO:0005515
Vimu3g03087 528 SMART ANK_2a 220 250 IPR002110 GO:0005515
Vimu3g03087 528 SMART ANK_2a 44 73 IPR002110 GO:0005515
Vimu3g03087 528 Gene3D - 151 239 IPR036770 -
Vimu3g03087 528 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Vimu3g03087 528 SUPERFAMILY RING/U-box 329 391 - -
Vimu3g03087 528 ProSiteProfiles Zinc finger RING-type profile. 335 385 IPR001841 -
Vimu3g03087 528 Gene3D - 4 150 IPR036770 -
Vimu3g03087 528 PRINTS Ankyrin repeat signature 112 127 IPR002110 GO:0005515
Vimu3g03087 528 PRINTS Ankyrin repeat signature 193 207 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03087 Vimu-Chr3 44671837 44676133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03087 3 240 Miscellaneous Gene Families AT3G12360 30.859 2.58e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03087 K19044 - gmx:100785638 989.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03087 3 44671837 44676133 Vimu3g03087 3 44671837 44676133 ECH
Vimu8g01999 8 25878638 25879940 Vimu3g03087 3 44671837 44676133 PCT