Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03061 ATGAAAACAACCACAAAGTATAACATGATTTTCGAATTTCAGTTCTTCTATCCAAGAAAACTGCGCTTATTGGCAAACATGAGAGCGGACTCAAACGTTTTGTTCCTTGTGCCTTTGGCTTTGTTGTTCCTTATTGCAATTCCACAATTGTGCTTGTGTGCAAATTCAACATCTGACCACACAATGGAAGAGCGACAAGCACTTGAAAGTCTCAAAGGAAGTTTCTCCAACAGCTCCATGTTTGTTTCTTGGGAAGGAAATGATCACTGCCAGTGGAAAGGAGTGCAATGTGATGCTATCACCGGACACGTTATCAAGCTTTTTCTCCATTGGCAAAACACATGCAATTATCGTCGAATCGGTTTTGTACGCACGTGCTCAACACAAAATTCTAATGGCGTTCACCCTTCTATATTGGATTTGAAACACTTGAACTTTCTCGAACTGACAGGAATTTCTTTTGGCAATGGTCCTATACCGGCATTCCTTGCTTCCATGAATCAGCTGACACATCTTAACCTCTCTCACTGTGATTTCAGGGAAAAGGTTCCTCACCAACTTGGTAATCTTTCAAACTTGCAGGTTCTTGATTTCAGTGGAAATCCTTTAGATGTTGATGATCTGGCTTGGCTTTCAAAACTTTCATCACTGAAACACCTAGCAATGAATGGAGTGGGCCTTGGAGGGGCATATAATCTATTGCAGGTGCTTGATACCCTTCCTTTCCTGTTGCAAGTAGAGTTTAGTAGATGTCATCTTACCAACATGAACTTTCCTGCTGGCCATGTTAATTCTACGTTTCTTGCCAATGTTCAAGTTCTGAATCTTGCTCAAAATTTACTTTCTGACCCTGTTCCTGATGCTTTTCTGAATATGAGTTCAATTGTAGACCTCAACCTTGGTTACAACAATCTCACTACACTTCCAAATTGGTTGGTTAATTTTGATGCCCTTGTCAATCTTAATCTTTCTGGTAATCCCTTCAAGAGGATTGAAGCCTCCGTGATATCTATATTGACAAACATGTGCTCCCTCCGATCATTAGACTTGTCATCTAGCATACCTATTTTTGAAGGGTCGGGGCTAGGTCAGGGAAACTATTCGGGATGTGGAAAATACGATCTGGAAATTTTAGTGTTGAGAGGAAGTGGAATTAAGGACAGTTTGCCTACTTGGTTTGGACAACTGTCAAATTTGAATATCCTAGATCTTGCAATGAATTTATTCTATGGTCCAATTCCATCATCCTTTGGAAATTTGTTGGCCTTGACAACATTAGATCTTTCGGATAATCAGCTACATGGGTCAATTCCAGCTACCTTTGGACGGTTGTCATCTTTAGGTTTATTGGATCTTTCTAATAATCACTTGAATGGAAGCATTCCTGAAAGCCTTGGACTACTGAGGAATCTAGTGACCTTAAGGATGGTTAATAACTCATTCACAGGTATCATATCAGAGATTCACCTTCGTAACCTCTCAAATTTGATAGAATTTCAAATAGGATACAACAATCTGAATTTGAAGACAGACTCCAATTGGGAACCACCTTTCAAGTATTTACAAGTCCTTGGAATGGCCTACAATAATCTGACACATTTTCCTCAGTGGGTTCAAACACTGGGGCAACTTTTTACATTGGACATCTCTAACAATCAGATTAGAGGAAATATTCCAATAGATTTTGGTCATCATCTTCCAACCTTGTATAGGCTAAATCTCCGTACTAACCTTATAGAAGGTTCAATACCAGACTCATTGTGCAAGATGGAAAGCTTGTTCATTCTCGATCTCTCAGAAAACAGATTTTCTGGCACAATTCCTGATTGTTGGGTAAGGCAGTCTTTCTCAGTCTTAAATGTGGCATCAAACCGGTTATCCGGCACCATTCCAAACTCATTTGGGAATCTTACAGTGGGATGGTTGAATTTGAGCAACAATAGTCTCCATGGAGAGCCTTTTCAACCCTTGCAAAGTAATAAAGGGTTGCAGATTTTGGATCTCGGTGAGAATCAATTTACCGGAAAAATACCTTCTTGGTGGGCAGCAAAAACTGTTCTTGAAATTCTGAGACTGCGGGGGAACTTGTTCAGTGGTGATATTCCAACATCTCTCTGCCAGTTCTATAATGTAAAAATCCTGGACCTTGCTGATAATAATTTGTCAGGTTCAATCCCTCCTTGCATTGGTGATTTCCGGGGTATGATGATAAATGGAGTTGAAGCACCACCAGCATTCACTTATGAAGCAGATGAATGGTCAAAAAGGCATTTCAAGCAATTTTTGAAAGGAAATGAATATGATTACACAAAAAAATACGCATATCCGCATTTGGTAAACATAGACTTGTCAAGTAACAGTCTCACGGGATCAATCCCTGATGGTGTAACCTCTCTTTCAGGATTGATTGGCATGAACTTATCACATAATCACTTGTCAGGAAAAATCCCAAGCAATATAAAGAAAATGCAGTCGCTGGAGTCTCTGGATTTCTCCAACAACAACCTTTCTGGTCCCATCCCAACAGACATGTCCATCATGCATAATCTAGGTTTCTTAAACTTGTCCTACAATAATTTATCAGGTTCGGTTCCAATAAATGATCATTTTTTGACCTTTGATAATCGATCTTTTGCTGGCAATCCACATCTCTGCGGAGAACCCCTGGCGAATAAATGTTCTATCAGTGATGGGGTACCCACCAGCGTGAGCCATGAAGAAAACAATGACATCGGTGATAAGAAAGAAGATGTGTTGTTTTACTTTGTCATTGCACTTGGTTTCATAACAGGGTTTTGGGCATTCTTCGGAACTCTGTTTTTGAAAAAGGATTGGAGACATGCTTACTTTCTTTATGTGGATGGGGTTGTGGATAAGATGTATGTAACAATAATGGTAAGACTAGCAAGTGTTGGATCGTGA 2922 0.3977 MKTTTKYNMIFEFQFFYPRKLRLLANMRADSNVLFLVPLALLFLIAIPQLCLCANSTSDHTMEERQALESLKGSFSNSSMFVSWEGNDHCQWKGVQCDAITGHVIKLFLHWQNTCNYRRIGFVRTCSTQNSNGVHPSILDLKHLNFLELTGISFGNGPIPAFLASMNQLTHLNLSHCDFREKVPHQLGNLSNLQVLDFSGNPLDVDDLAWLSKLSSLKHLAMNGVGLGGAYNLLQVLDTLPFLLQVEFSRCHLTNMNFPAGHVNSTFLANVQVLNLAQNLLSDPVPDAFLNMSSIVDLNLGYNNLTTLPNWLVNFDALVNLNLSGNPFKRIEASVISILTNMCSLRSLDLSSSIPIFEGSGLGQGNYSGCGKYDLEILVLRGSGIKDSLPTWFGQLSNLNILDLAMNLFYGPIPSSFGNLLALTTLDLSDNQLHGSIPATFGRLSSLGLLDLSNNHLNGSIPESLGLLRNLVTLRMVNNSFTGIISEIHLRNLSNLIEFQIGYNNLNLKTDSNWEPPFKYLQVLGMAYNNLTHFPQWVQTLGQLFTLDISNNQIRGNIPIDFGHHLPTLYRLNLRTNLIEGSIPDSLCKMESLFILDLSENRFSGTIPDCWVRQSFSVLNVASNRLSGTIPNSFGNLTVGWLNLSNNSLHGEPFQPLQSNKGLQILDLGENQFTGKIPSWWAAKTVLEILRLRGNLFSGDIPTSLCQFYNVKILDLADNNLSGSIPPCIGDFRGMMINGVEAPPAFTYEADEWSKRHFKQFLKGNEYDYTKKYAYPHLVNIDLSSNSLTGSIPDGVTSLSGLIGMNLSHNHLSGKIPSNIKKMQSLESLDFSNNNLSGPIPTDMSIMHNLGFLNLSYNNLSGSVPINDHFLTFDNRSFAGNPHLCGEPLANKCSISDGVPTSVSHEENNDIGDKKEDVLFYFVIALGFITGFWAFFGTLFLKKDWRHAYFLYVDGVVDKMYVTIMVRLASVGS 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03061 973 Pfam Leucine rich repeat N-terminal domain 63 98 IPR013210 -
Vimu3g03061 973 Gene3D Ribonuclease Inhibitor 616 896 IPR032675 -
Vimu3g03061 973 SMART LRR_typ_2 268 291 IPR003591 -
Vimu3g03061 973 SMART LRR_typ_2 420 443 IPR003591 -
Vimu3g03061 973 SMART LRR_typ_2 708 732 IPR003591 -
Vimu3g03061 973 SMART LRR_typ_2 166 190 IPR003591 -
Vimu3g03061 973 SMART LRR_typ_2 292 315 IPR003591 -
Vimu3g03061 973 SMART LRR_typ_2 541 565 IPR003591 -
Vimu3g03061 973 SMART LRR_typ_2 823 847 IPR003591 -
Vimu3g03061 973 SMART LRR_typ_2 590 614 IPR003591 -
Vimu3g03061 973 SMART LRR_typ_2 444 468 IPR003591 -
Vimu3g03061 973 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 390 485 - -
Vimu3g03061 973 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 773 893 - -
Vimu3g03061 973 Gene3D Ribonuclease Inhibitor 371 512 IPR032675 -
Vimu3g03061 973 PRINTS Leucine-rich repeat signature 444 457 - -
Vimu3g03061 973 PRINTS Leucine-rich repeat signature 423 436 - -
Vimu3g03061 973 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 517 738 - -
Vimu3g03061 973 Gene3D Ribonuclease Inhibitor 513 615 IPR032675 -
Vimu3g03061 973 ProSiteProfiles Leucine-rich repeat profile. 446 468 IPR001611 GO:0005515
Vimu3g03061 973 Gene3D Ribonuclease Inhibitor 61 263 IPR032675 -
Vimu3g03061 973 Pfam Leucine rich repeat 270 327 IPR001611 GO:0005515
Vimu3g03061 973 Pfam Leucine rich repeat 423 480 IPR001611 GO:0005515
Vimu3g03061 973 SUPERFAMILY L domain-like 516 868 - -
Vimu3g03061 973 SUPERFAMILY L domain-like 87 352 - -
Vimu3g03061 973 PANTHER LRR RECEPTOR-LIKE KINASE 374 446 - -
Vimu3g03061 973 Gene3D Ribonuclease Inhibitor 264 370 IPR032675 -
Vimu3g03061 973 SUPERFAMILY RNI-like 337 612 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03061 Vimu-Chr3 44437133 44440604 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03061 63 960 Miscellaneous Gene Families AT1G74190 28.471 1.59e-78 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03061 - - vum:124837490 1773.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03061 3 44437133 44440604 Vimu3g03061 3 44437133 44440604 ECH
Vimu3g03061 3 44437133 44440604 Vimu8g02101 8 27151493 27154936 PCT