Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02004 ATGAGTCAAGTTTCTGCAGAGATGAAGGCCAAATCTGAGGTGTATCATGGAGATGAACTGTGCCAAGAAAAGACCAAGTTGCTGCTGAAGGAGGTAGGGCTACCCAATGGGCTTTTGCCCTTGAAGGACATTGAAGAGTGTGGGTACGAGAAGGAAAGTGGGTTTGTGTGGCTGAAGCAGAAGAAGACCATAAACCACAAGTTTGAGAAGATTGGGAAGCTAGTGTCCTATGCAACTGAGATCACAGCCTATGTTGAAGTTGGTAAGATAAAGAAGCTGACTGGTGTGAAGGCGAAGGAACTCTTGGTTTGGGTGACACTGAATGAGATCTTTGTTGATGATCCACCCAGTGGGAAGATCACCTTCAAGACCCCTGCAGCGTTGTTCAGGACATTCCCTGTCTCAGCTTTTGTGATTGAGGAACCAGTCAAGGAACTCAAGAATAAAGAAGAAGAAAAAGAAGAAAAAGAAGAGAAGCAAGTGAAACAAGTTGGTAATGCTGTTGAAGTTCAAGAAGTTTGA 522 0.4425 MSQVSAEMKAKSEVYHGDELCQEKTKLLLKEVGLPNGLLPLKDIEECGYEKESGFVWLKQKKTINHKFEKIGKLVSYATEITAYVEVGKIKKLTGVKAKELLVWVTLNEIFVDDPPSGKITFKTPAALFRTFPVSAFVIEEPVKELKNKEEEKEEKEEKQVKQVGNAVEVQEV 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02004 173 Pfam Protein of unknown function, DUF538 28 137 IPR007493 -
Vimu3g02004 173 SUPERFAMILY At5g01610-like 4 141 IPR036758 -
Vimu3g02004 173 Gene3D - 4 148 IPR036758 -
Vimu3g02004 173 PANTHER T31J12.3 PROTEIN-RELATED 10 138 IPR007493 -
Vimu3g02004 173 Coils Coil 139 167 - -
Vimu3g02004 173 MobiDBLite consensus disorder prediction 147 173 - -
Vimu3g02004 173 MobiDBLite consensus disorder prediction 147 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02004 Vimu-Chr3 34906058 34907228 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02004 - - pvu:PHAVU_007G202800g 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02004 3 34906058 34907228 Vimu3g02004 3 34906058 34907228 ECH
Vimu6g01928 6 17379728 17381519 Vimu3g02004 3 34906058 34907228 PCT