Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01938 ATGACATTGTGCGCGTCTCTTCTCGCTCCCGTCCTTTTGCTTCACTGTGCTAGGGAAGATCAGCGGGTGCTCTCCTATCAGATTGGAAATTCAGCTAAGATGGACTCTGCTCTCAGGACTGTTGGAGTCAAGTACGAGTGCTTGCTTTTTGATATGGATGACACTCTCTACCCGCTGAGCATAGGTCTCAATTTATTTTGTCGCAAGAACATTCAAGAGTATATGTTAGAACACTTGCATATTGAAGAAGATGAAGTGCCAAAAATGTGCTTGGATTTGTATAGAGAATACGGAACAACTATGGCAGGATTGAAGGTCCTTGGTTATGAATTTGACAATGACGAGTTTCATGCTTACGTTCATGGAAGGTTACCATACGAGAAACTGAAACCTGATCCAGTATTAAGGAACCTTCTGCTTTCCATGCCTCAACGTAAAATAATATTCACCAATGCAGATCACGCACATGCAGTTAAAGTTCTCAACAGATTGGGTTTGGAAGATTGCTTTGAGGGCATCATATGCTTTGAAACGCTTAATCCTCACAAACAAATCAATTACATGGATTTACCGAATGATAATCATGTTCTCACAGATTTAACAGAGAGTGGATGTTTCAATTCCCAGACTCATATCCTCTGTAAACCCTCTGTGGAAGCCTTTGAAGCTGCTATTCGGATTGCTAATGTGGATCCAAAGAAAACAATTTTCTTTGATGACAGTGTTAGAAATGTTGCAAGTGCAAAAGTAGCTGGACTTCACACTGTCTTATTGGGTCATTCAGATTTGGTGCCTGGTGCTGATCATGCCCTGAATAGCATTCACAATATCAAAGAAGCATTACCTGAAATATGGGAGATTGAAGAAGGCAACCAACAGCAAAAGATTCAACCTCCAGCAGTGGAAACCATGGTCCTAGCTTGA 924 0.4123 MTLCASLLAPVLLLHCAREDQRVLSYQIGNSAKMDSALRTVGVKYECLLFDMDDTLYPLSIGLNLFCRKNIQEYMLEHLHIEEDEVPKMCLDLYREYGTTMAGLKVLGYEFDNDEFHAYVHGRLPYEKLKPDPVLRNLLLSMPQRKIIFTNADHAHAVKVLNRLGLEDCFEGIICFETLNPHKQINYMDLPNDNHVLTDLTESGCFNSQTHILCKPSVEAFEAAIRIANVDPKKTIFFDDSVRNVASAKVAGLHTVLLGHSDLVPGADHALNSIHNIKEALPEIWEIEEGNQQQKIQPPAVETMVLA 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01938 307 NCBIfam HAD-IA family hydrolase 213 257 IPR006439 -
Vimu3g01938 307 NCBIfam pyrimidine 5'-nucleotidase 46 257 IPR010237 -
Vimu3g01938 307 CDD HAD_5NT 47 259 IPR010237 -
Vimu3g01938 307 Gene3D - 109 285 IPR023214 -
Vimu3g01938 307 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE 36 295 - -
Vimu3g01938 307 SFLD C1.5.3: 5'-Nucleotidase Like 44 288 IPR010237 -
Vimu3g01938 307 SUPERFAMILY HAD-like 47 261 IPR036412 -
Vimu3g01938 307 SFLD Haloacid Dehalogenase 44 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01938 Vimu-Chr3 34373046 34378234 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01938 K18551 - gmx:100814291 521.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01938 3 34373046 34378234 Vimu3g01938 3 34373046 34378234 ECH
Vimu6g01982 6 17777829 17779692 Vimu3g01938 3 34373046 34378234 PCT