Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01903 ATGACATCCAAAAGCGGTGGCATGGATGATTTTCCTAAGGGTTTGTGTGGGTGGAGTTGGAAGGAGAACAAGTTGTTTGAGCTGGCTTTGGCCGTGGTAGATGAGAACCACCCAGAACGGTGGGAGATTGTGGCAGCCATGGTGGGAGGAGAAAAGAGTGCAGGGGAAGTTCAAGAACAATATGTATTTCTTTTGGAAGATTTAAATCTCATAGAATCTGGAAAATTGGACCATGAACTGGGAGTGGGAGAAGCTCACCCCTGTGTCCTAGTCAACTCAATTGAGTCCTTGTGCTTGTCTGATAGAGATAGCAGCATGTAA 321 0.4611 MTSKSGGMDDFPKGLCGWSWKENKLFELALAVVDENHPERWEIVAAMVGGEKSAGEVQEQYVFLLEDLNLIESGKLDHELGVGEAHPCVLVNSIESLCLSDRDSSM 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01903 106 FunFam Transcription factor SRM1 13 78 - -
Vimu3g01903 106 Gene3D - 17 63 - -
Vimu3g01903 106 SUPERFAMILY Homeodomain-like 18 73 IPR009057 -
Vimu3g01903 106 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 16 76 IPR044636 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01903 Vimu-Chr3 33978926 33982266 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01903 - - var:108325196 216.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01903 3 33978926 33982266 Vimu3g01903 3 33978926 33982266 ECH
Vimu6g02004 6 17957190 17958987 Vimu3g01903 3 33978926 33982266 PCT