Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01872 CAGACATATTTCTTCGATATAGCAATGGTTGCTCCTTGTCCAACTTCCATGATGGTAAGAACCAAGAAAACAAAGGCTGTGGGAGTTCCCACGATCGACCTTTCGTTGGAAAGGTCGAAGCTGTCGGAAACAGTGGTGAAAGCATGTGAAGAATATGGTTTCTTCAAGGTGGTGAACCACAGTGTGGCAAAGGAGGTGATTTCAAGGTTGGAAGAGGAGGGAACGGCGTTTTTCTCCAAAACCTCCTCCGAGAAGCGTCAAGCTGGCCCTGCCACCCCTTTCGGATATGGCTGCAGAAATATTGGCCCCAATGGCGATATGGGTCACCTCGAGTATCTTCTCCTTCATACCAATCCTCTTTCCGTATCTGAGAGATCCCAAACCATAGCCACTGACCCTACCAAGTTCAGTTGCGCCGTAAATGATTATATAGAAGCAGCTAAAGGACTAACATGTGAGATTCTTGATCTTGTGGCGGAGGGTCTGTGGGTCCAAGACCACTTCTCACTCAGCAATCTCATCAAAGACGTCCACAGTGACTCACTCCTCAGGATCAATCAGTACCCTCCCGTGAGCCTAAAGGGCAACAACAATAGTGACACGTCCAAACTCGACCCACATCAGCTCCAAAACCAAAATAATAATAATAACATTGGATTTGGAGAGCATTCTGACCCTCAGATCTTGACCATCATGCGATCCAACAACGTGGACGGCCTTCAGATTTCCACCCACGATGGCTTGTGGATCCCTGTCCCCCCTGACCCTAATCAGTTCTTCGTTATGGTTGGTGATGCCCTGCAGGTTTTGACAAATGAAAGGTTTAGAAGCGTGAGACACAGAGTATTGACCAACGCAACCAAGGCCAGAATGTCGATGATGTACTTTGCCGCACCACCGCTGAATTGGTGGATCACTCCACTGCCCAAGATGGTCACACCCCTCAATCCAACTCTCTATAAGCCCTTCACCTGGGCCCAATACAAACAAGCAGCTTACTCTCTACGATTGGGAGACACTCGCCTTGATCTCTTCAAGATCCAACGACAACAAGATACCCATCTCGCATCTGCTTCTCCCTGA 1083 0.4838 QTYFFDIAMVAPCPTSMMVRTKKTKAVGVPTIDLSLERSKLSETVVKACEEYGFFKVVNHSVAKEVISRLEEEGTAFFSKTSSEKRQAGPATPFGYGCRNIGPNGDMGHLEYLLLHTNPLSVSERSQTIATDPTKFSCAVNDYIEAAKGLTCEILDLVAEGLWVQDHFSLSNLIKDVHSDSLLRINQYPPVSLKGNNNSDTSKLDPHQLQNQNNNNNIGFGEHSDPQILTIMRSNNVDGLQISTHDGLWIPVPPDPNQFFVMVGDALQVLTNERFRSVRHRVLTNATKARMSMMYFAAPPLNWWITPLPKMVTPLNPTLYKPFTWAQYKQAAYSLRLGDTRLDLFKIQRQQDTHLASASP 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01872 360 SUPERFAMILY Clavaminate synthase-like 12 339 - -
Vimu3g01872 360 PRINTS Isopenicillin N synthase signature 259 285 - -
Vimu3g01872 360 PRINTS Isopenicillin N synthase signature 45 62 - -
Vimu3g01872 360 PRINTS Isopenicillin N synthase signature 223 244 - -
Vimu3g01872 360 MobiDBLite consensus disorder prediction 193 220 - -
Vimu3g01872 360 Pfam 2OG-Fe(II) oxygenase superfamily 183 298 IPR044861 -
Vimu3g01872 360 Gene3D - 6 336 IPR027443 -
Vimu3g01872 360 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 29 331 - -
Vimu3g01872 360 FunFam Gibberellin 2-beta-dioxygenase 2 12 336 - -
Vimu3g01872 360 Pfam non-haem dioxygenase in morphine synthesis N-terminal 29 93 IPR026992 -
Vimu3g01872 360 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 178 307 IPR005123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01872 Vimu-Chr3 33624791 33628027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01872 20 347 Glycosyltransferase AT5G59530 26.000 9.85e-23 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01872 K04125 - gmx:100779525 632.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01872 3 33624791 33628027 Vimu3g01872 3 33624791 33628027 ECH
Vimu6g02032 6 18197836 18201282 Vimu3g01872 3 33624791 33628027 PCT