Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01859 ATGAATCACGGCCGTCTGATTTCTGGTGGAGGATGGCTACTCCGGAGACTTTGCACGGCGGCTGAGAGTCCAGCAAAAAGTCCAAACCTCTATCGCATATTATCGGCGTTGAAAAAGACTGGAGGAAGCGTGTCGGAAACTTTGGACAACCATGTAATGCAAGGCAAAGCCATAAACAAAAGAGAACTCGAAAGATGTGTCGACGAGCTCCGAAGGTATCGCAAATTTCAGCATGCACTCGAGATAATTGAATGGATGGAGATGAGGAAAATTAACTTTTCCTGGAATAATTATGCAGTGCAATTAGATCTTGTGTCCAAGACCAAAGGGGTGGTTGCGGCTGAAGAGTTTTTCAGTGGTCTTCCAACTCCGGCCAAGAACAAGTATACGTATGGTGCTCTCTTGAACTGTTACTGCAAGGAACTAACGAAAGACAAGGCATTGAGTCATTTTGACAAAATGGATGAATTGGGTTATGCCAATTCTCTGGCTTTCAGCAATTTGATGAGTCTGTATATGAGAAGTGGTGAACCGCAGAAAGTGCCTCACCTGGTGGAGCTAATGAAAAGGAGAAGCATTCCCTTGTCTTCATTCACGTATCATGTCTGGATGAACGCATGCGCCTCTTTGGGCGATCTTGATGGGGTGGAGAGAGTCTATGAGGAGATGAAAACCGAAGATCAAATTGGTTGGCAGACTTACAGCAACCTTGCTGCTATTTATGTGAAGGTTAAGGACTTTGAGAAGGCTGAAATGATGCTTAAGGAGCTGGAGAAACGAGTGAAGCCAAGGCAGCGTGATGCTTACCATTGCTTGCTTGGCCTCTATGCTGGGACAGGTAATCTGGGAGAAGTTCACAGAGTGTGGAATTCCCTCAAGTCTGTCTCCCCTGTGACCAATTTTAGCTATTTGGTTATGCTTAGTACCCTCCGAAGGCTTAATGATATAGAGGGCTTAACAAAATGCTTTAAGGAGTGGGAAGCTAGTTGTGTTAGCTATGATGTGAGGTTAGCTGGTGTCTGCGTTAGTGCTTATTTGGGTCAGAACATGGTGGAAGAAGCTGCATTGGTGTTTGAGGGGGCTAGCAGGAGGAGTGAAGGGCCTTTGTTTAGGATTGAGGAAATGTTCATGTTGTATTTCTTGGAGAAACGTCAATTGGATGCTGCTCTGAGGCACTTGGAGGCAGCGCTTTCAGAAGTCAAGGGTGATGAATGGCATCTTTCACCACAAGTTGTTGGGGCTTTTCTGAAGTACTACGAAGAAGAGACGGATATGGATGGTGTTGATGAGTTGTGTAAGATTCTGAAGGCTAAGAATTTTGATGATTCCTGGATTAAAACTTGCATTAATGAGGCCAAAGCGTCTCCTGAAACTGATCCAAGATTGAAGGAAGATGATCCTCAAAACTATCGTGCGCAGGAGAACTAG 1428 0.4496 MNHGRLISGGGWLLRRLCTAAESPAKSPNLYRILSALKKTGGSVSETLDNHVMQGKAINKRELERCVDELRRYRKFQHALEIIEWMEMRKINFSWNNYAVQLDLVSKTKGVVAAEEFFSGLPTPAKNKYTYGALLNCYCKELTKDKALSHFDKMDELGYANSLAFSNLMSLYMRSGEPQKVPHLVELMKRRSIPLSSFTYHVWMNACASLGDLDGVERVYEEMKTEDQIGWQTYSNLAAIYVKVKDFEKAEMMLKELEKRVKPRQRDAYHCLLGLYAGTGNLGEVHRVWNSLKSVSPVTNFSYLVMLSTLRRLNDIEGLTKCFKEWEASCVSYDVRLAGVCVSAYLGQNMVEEAALVFEGASRRSEGPLFRIEEMFMLYFLEKRQLDAALRHLEAALSEVKGDEWHLSPQVVGAFLKYYEEETDMDGVDELCKILKAKNFDDSWIKTCINEAKASPETDPRLKEDDPQNYRAQEN 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01859 475 PANTHER OS12G0527900 PROTEIN 26 456 - -
Vimu3g01859 475 FunFam Pentatricopeptide repeat-containing protein mitochondrial 60 267 - -
Vimu3g01859 475 Coils Coil 383 403 - -
Vimu3g01859 475 Gene3D Tetratricopeptide repeat domain 233 458 IPR011990 GO:0005515
Vimu3g01859 475 MobiDBLite consensus disorder prediction 454 475 - -
Vimu3g01859 475 NCBIfam pentatricopeptide repeat 198 226 IPR002885 -
Vimu3g01859 475 Gene3D Tetratricopeptide repeat domain 59 232 IPR011990 GO:0005515
Vimu3g01859 475 Pfam PPR repeat 129 158 IPR002885 -
Vimu3g01859 475 Pfam PPR repeat 165 192 IPR002885 -
Vimu3g01859 475 Pfam PPR repeat 233 260 IPR002885 -
Vimu3g01859 475 Pfam PPR repeat 198 226 IPR002885 -
Vimu3g01859 475 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Vimu3g01859 475 MobiDBLite consensus disorder prediction 456 475 - -
Vimu3g01859 475 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 226 IPR002885 -
Vimu3g01859 475 SUPERFAMILY TPR-like 196 297 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01859 Vimu-Chr3 33370152 33371652 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01859 30 436 EF-hand Containing Proteins AT1G02150 34.625 1.03e-78 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01859 - - gmx:100781679 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01859 3 33370152 33371652 Vimu3g01859 3 33370152 33371652 ECH
Vimu3g01859 3 33370152 33371652 Vimu6g02314 6 20241055 20242950 PCT