Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01854 ATGGATCACTTCAGATTCAACAAAACCCTTCTCCTCATCGGAGCACTCTCTTGCCTCCTCCTATCCACCGCCGCCTCCGCCCGTCAACTTCTAGCCGCACCTGTCCCCCCTGAGCTTACACAGTTCTGCAGCGGCACCGATAACCCATCCCTATGTGTCGATACCATCGCCCCCTTCCTATCTGGTTCCTTCGACCCCGTCAAAGCACTGGAGGGCGAGATCAACGCCACCCTCCAGAAGGCCAGCGAGATCGCTGCTTCCATCTCCAAGCAGCTGGAAGATCCCACCACCGCCAAGAACGCCTTGGACGCGCTCAACATCTGCAAGTCTCAGTACGATGACATGTTGGACAGCATAAAGGAGTCTCTGAATCTGGTGGCTCAGATGAACGTGGCGGATGCTTATAACAAAATGAGCGCCGTGATTTCCTACAAATCCAGCTGCGACGACGCTTACACCGAGTCTCCCGGCGTCGAAATGCCCTTCCGCCAGGAAGCCACCACGCTCTTCGAGTTGAGTGGAAATTGCGTCACCGTCCTGGAAACCATCGTTAACACTCAGAAGGTGTAA 570 0.5526 MDHFRFNKTLLLIGALSCLLLSTAASARQLLAAPVPPELTQFCSGTDNPSLCVDTIAPFLSGSFDPVKALEGEINATLQKASEIAASISKQLEDPTTAKNALDALNICKSQYDDMLDSIKESLNLVAQMNVADAYNKMSAVISYKSSCDDAYTESPGVEMPFRQEATTLFELSGNCVTVLETIVNTQKV 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01854 189 CDD PMEI-like_2 37 176 - -
Vimu3g01854 189 SMART PMEI_2 34 179 IPR006501 GO:0004857
Vimu3g01854 189 PANTHER PECTINESTERASE INHIBITOR-LIKE 11 183 - -
Vimu3g01854 189 Pfam Plant invertase/pectin methylesterase inhibitor 40 177 IPR006501 GO:0004857
Vimu3g01854 189 FunFam Invertase/pectin methylesterase inhibitor family protein 36 183 - -
Vimu3g01854 189 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 182 IPR035513 -
Vimu3g01854 189 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 184 IPR035513 -
Vimu3g01854 189 NCBIfam pectinesterase inhibitor domain 15 182 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01854 Vimu-Chr3 33310881 33311953 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01854 - - pvu:PHAVU_007G213600g 288.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02047 6 18342766 18343767 Vimu3g01854 3 33310881 33311953 PCT