Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01830 ATGGAGGCTGTGTGTTTAAAATCTGGGATGCTTCCCACGATCTCTATTGGTGGGTCGCTGGACGCACGTGCCAATCATTCTCAGGTGAGCACGGTGGGGCGTTCCGCTGGGGATAAACCGCCGCAAAGGTCGTTGTTTTCGAGGTTTTCCTTTCGGTATCCTTTGGAATCTCTCTGGCATCGGGGGAACAACAGCAAGCACAAAGGGCTCGCCCTCGACGACGCCGTTTTGGCGGATAACGCCGAAGCGAAGGCCGTTAGAGATGACGGCCAGGGTGACGAAATGGAACGCGGAAACTGGGTTTTGAAGATTTTGCGCGTGAAGTCCGTGTGGGAGGGGAAACAGCGCCATGAAGAGGAGGTCGCGGTTAATGATCAGACTCAAAGCAATTATGATGGGGAGGAAGTGTGTGAATGTGATGCTTGCGGAGTTGGGGAAGACGACGATTACGATGACGCAGAAGAGGCTGAATTCGATAGAGGCTCCTTTTCCAGAATGCTCCGGAGGGTATCGTTAGCAGAAGCTAGGTTGTATGCTCAGATGTCACACTTGGGGAACTTGGCTTACGATATACCGAAAATCAAGCCCGGGAAACTCTTAAAACATTATGGTTTGCGCCTTGTAACTTCATCAATAGAGAAGAAGGAATTGGCAGCAATAGCTGAAAAAGATACCCAGAAAGTTGAAACTGACGAGAAGGAAGAAGAAGAAGAAGAGGGAAAAAGAGAGGATCCGAAGCACAGTGGGTATAACATAAGTGCAACTACTGCTTATAACATTGCCGCCTCTGCTGCCACATATCTGCATTATCAGACTAGGAGCATATTTCCATTCAAATCCTCAAATGCAGTGACTGGTGAAGCTTCACTCGATGGAAGCAATGAGAGCCTAGACAGGGACTTAATAAGCTCAGAGGTGTCATCTTTGATGGCCACAACTGATTCAGTGACAGCAGTGGTTGCGGCAAAGGAGGAAGTAAAGCAGGCTGTCGCTGATGATTTAAACTCTGCACATTCATCACCCTGTGAATGGTTTGTCTGTGATGATGACCAGAGTGGTGCAAGATTTTTTGTTATTCAGGGTTCAGAGACAATGGCTTCTTGGCAAGCAAACCTGCTCTTTGAACCGATTAAATTTGAGGGGTTAGACGTCCTTGTGCACAGAGGTATATACGAGGCTGCTAAAGGGATGTATGAGCAGATGTTGCCAGAAGTACATGCTCACCTAAAATCTCGAGGTTCTCGTGCAACTTTTCGTTTCACTGGGCATTCTCTTGGTGGAAGCCTGGCATTACTAGTAAATCTTATGTTGTTGATTAGGCAGGAAGTGCCTACCTCCTCTCTACTTCCTGTGGTAACATTTGGTTCCCCATCCATCATGTGTGGGGGGGATAGTCTGCTAGAAAAATTAGGTTTGCCTAGGAGTCATGTTCAAGCAATTACAATGCACAGAGACATTGTTCCTCGAGCATTTTCTTGCAATTACCCTAACCACGTTGCAGAACTGTTGAAGGCCGTCAATGGGAACTTCCGTAGTCATCCTTGTCTCAATAAACAGAAGGTACTATATACACCAATGGGTAATCTGCTGATTCTGCAGCCAGATGAGAAATTTTCACCAAGCCATCATCTCCTGCCTTCAGGCAGTGGTTTATATCTTCTGTGTTGTCCTTTGTCAGAATCCAAGGACACAGACAAGCAGCTCCGAGCTGCTCAGACGGTGTTCTTGAACTCACCTCACCCACTTGAGATATTAAGTGACCGTTCTGCTTATGGATCTGGAGGAAGTATACAAAGAGATCATGACATGAATTCCTACTTAAAGTCTGTGAGAACTGTGATTCGCCAGGAACTTAACCAGATCCGTAAAGTCAAGAGGGAGCAAAGGCGGAAGGTGTGGTGGCCTCTCGTGTTACCACGTGGAATGGATACCAGTAATGTTGCTGGGAGGTCCATGATATCAATCAATGTAGGTCAACGTCAGTCACCCTTCTCTGGCATGATACAAACAGGTAGACAGTCCCTGAAAAGGTTCAGGAGGCTTGTTACATCCCAGCACATACATTTGTTTGTGCTGCTCTTGTTCCCTGCTCGCTTGTTACTCTTGGGAACATACAGCCTAATTAGCCTTAAATGA 2136 0.4686 MEAVCLKSGMLPTISIGGSLDARANHSQVSTVGRSAGDKPPQRSLFSRFSFRYPLESLWHRGNNSKHKGLALDDAVLADNAEAKAVRDDGQGDEMERGNWVLKILRVKSVWEGKQRHEEEVAVNDQTQSNYDGEEVCECDACGVGEDDDYDDAEEAEFDRGSFSRMLRRVSLAEARLYAQMSHLGNLAYDIPKIKPGKLLKHYGLRLVTSSIEKKELAAIAEKDTQKVETDEKEEEEEEGKREDPKHSGYNISATTAYNIAASAATYLHYQTRSIFPFKSSNAVTGEASLDGSNESLDRDLISSEVSSLMATTDSVTAVVAAKEEVKQAVADDLNSAHSSPCEWFVCDDDQSGARFFVIQGSETMASWQANLLFEPIKFEGLDVLVHRGIYEAAKGMYEQMLPEVHAHLKSRGSRATFRFTGHSLGGSLALLVNLMLLIRQEVPTSSLLPVVTFGSPSIMCGGDSLLEKLGLPRSHVQAITMHRDIVPRAFSCNYPNHVAELLKAVNGNFRSHPCLNKQKVLYTPMGNLLILQPDEKFSPSHHLLPSGSGLYLLCCPLSESKDTDKQLRAAQTVFLNSPHPLEILSDRSAYGSGGSIQRDHDMNSYLKSVRTVIRQELNQIRKVKREQRRKVWWPLVLPRGMDTSNVAGRSMISINVGQRQSPFSGMIQTGRQSLKRFRRLVTSQHIHLFVLLLFPARLLLLGTYSLISLK 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01830 711 SUPERFAMILY alpha/beta-Hydrolases 339 529 IPR029058 -
Vimu3g01830 711 MobiDBLite consensus disorder prediction 223 250 - -
Vimu3g01830 711 CDD Lipase_3 340 496 - -
Vimu3g01830 711 Pfam Lipase (class 3) 357 494 IPR002921 GO:0006629
Vimu3g01830 711 Coils Coil 218 238 - -
Vimu3g01830 711 Gene3D alpha/beta hydrolase 302 526 IPR029058 -
Vimu3g01830 711 PANTHER PHOSPHOLIPASE A1 PLIP2, CHLOROPLASTIC 26 700 IPR043367 GO:0008970
Vimu3g01830 711 Coils Coil 607 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01830 Vimu-Chr3 33038067 33041220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01830 1 711 Acyl Lipid Metabolism Gene Families AT1G02660 55.374 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01830 - - gmx:100786628 1122.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01830 3 33038067 33041220 Vimu3g01830 3 33038067 33041220 ECH
Vimu6g02069 6 18478181 18481566 Vimu3g01830 3 33038067 33041220 PCT