Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01821 ATGCCGGGAGAAGAATATGATGGTGTCGCCGGAGAACAGCGAAGACCTCTCATCATCAACCATGATTTTGATTCTTCAGTTCACATATTTCATCAAAATGAAGACACTATCTCTCCTTTGCCACTCAGTCATACAGAAACACTAGCTTTACCCTCTCTTCCCGTTCCTAACCAACGCCTTGCTTCTCTCGATGTCTTCCGCGGTCTAACCGTTGCGTTGATGATATTAGTTGATGACGTCGGAAGAGCATTCCCATCCTTGAATCATTCACCATGGTTTGGGGTGACACTAGCAGATTTTGTAATGCCATTTTTTCTCTTTGTGGTTGGCATTTCTATTGCTCTTGTATTCAAGAAAGTCTCTAGCAAACCCAATGCCACGAAGAAAGTTGTATTGAGGACAATTAAGCTTTTCCTTTTGGGGCTGTTACTTCAAGGTGGGTATTTCCATGGACGTGGCAAATTGACGTATGGAGTTGATTTGAGTAAAATTCGTTGGCTTGGTGTACTTCAGAGGATATCTATTGGATATTTCTTGGCCTCAATATCAGAGATTTGGCTTGTAAACCATAATATTTTGGTTGACTCACCGGCAGCTTTTGTGAGGAAATACTCCATTCAGTGGATGGTTTCGATCTTACTATGCTCAGTGTACCTTTGCTTGCTCTACGGTCTCTACATTCCAAATTGGAAATTTGAACATTCTAATATGCTTGGGTCCAGTCATTTATCAATTATTCAAAATGTTCATTGTGAAGTGAGGGGTAGTCTCGAACCTCCTTGTAATGCAGTGGGATTTGTTGATAGATTAATTCTTGGTGAAGATCATATGTACCAGCGACCTGTGTATATAAGGACAAAGGAGTGTAGTGTCAACTCTCCTGACTATGGACCCTTGCCTCCAAATTCACCTGGATGGTGCCTTGCACCATTTGATCCAGAGGGTATTTTGAGTTCACTCATGGCTGCAATTACTTGCTTCATGGGATTGCAATATGGTCGCATAATTGTACTTTTGCAGGATAACAAGCAGAGGGTACTTCTTTGGTCTGTGTTTTCCTTCGCTCTATTGTTAGTAGGATACATTCTGGAGATTTTAGGAATTCCTTTATCAAAAGCACTGTACACGATAAGCTACATGTTCATAACTGCAGGGGCATCGGGCTTAGTCTTGACTGCTATCTATTACATTGTTGACATAGAACATCACAGAAAGCCTACAATTTTACTGCAATGGATGGGAATGAATGCTCTTGTTGTATATGCATTGGCAGCTTGTGACATTTTCCCTGCAGCTATCCAGGGTTTCTATTGGCATTCTCCTGAAAATAATTTGGTTGACGCCAGTGAAGCTTTAATGCAGACCATATTTCATTCCGAAAAGTGGGGTACAATGGCCTTTGTAATCGTTGAGATTTTATTCTGGGACAACACTATTCAACCATCATCAAGTGTAAACAATCCTCCTGAAAAATGGCAGTTTGGAAGAGCAGTGGCATATAGAGCAGTTTATGGTATTAATGGTTCCAATCACAGAAAAGGTAAATGTAATGCTGCCAAGATATTACCAAGTAGGCTCAGCAAGGTCTCAGTGTCAACCGGTGACACAGAGGATAAATAA 1620 0.4105 MPGEEYDGVAGEQRRPLIINHDFDSSVHIFHQNEDTISPLPLSHTETLALPSLPVPNQRLASLDVFRGLTVALMILVDDVGRAFPSLNHSPWFGVTLADFVMPFFLFVVGISIALVFKKVSSKPNATKKVVLRTIKLFLLGLLLQGGYFHGRGKLTYGVDLSKIRWLGVLQRISIGYFLASISEIWLVNHNILVDSPAAFVRKYSIQWMVSILLCSVYLCLLYGLYIPNWKFEHSNMLGSSHLSIIQNVHCEVRGSLEPPCNAVGFVDRLILGEDHMYQRPVYIRTKECSVNSPDYGPLPPNSPGWCLAPFDPEGILSSLMAAITCFMGLQYGRIIVLLQDNKQRVLLWSVFSFALLLVGYILEILGIPLSKALYTISYMFITAGASGLVLTAIYYIVDIEHHRKPTILLQWMGMNALVVYALAACDIFPAAIQGFYWHSPENNLVDASEALMQTIFHSEKWGTMAFVIVEILFWDNTIQPSSSVNNPPEKWQFGRAVAYRAVYGINGSNHRKGKCNAAKILPSRLSKVSVSTGDTEDK 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01821 539 Pfam Heparan-alpha-glucosaminide N-acetyltransferase, catalytic 59 183 IPR012429 -
Vimu3g01821 539 PANTHER LD22376P 46 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01821 Vimu-Chr3 32914530 32923331 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01821 K10532 - gmx:100802361 814.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01821 3 32914530 32923331 Vimu3g01821 3 32914530 32923331 ECH
Vimu3g01821 3 32914530 32923331 Vimu6g02475 6 21518906 21524359 PCT