Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01683 ATGGCGGCAGGCCCAACCTCACCCTCCGATCGACCCACCATGGCCCCTCCCCCAATGTTCATCTCCGACTCAGTCGCTAAGGACGCCATACTCGCTTGGTTTCGAGGCGAGTTCGCTGCAGCCAACGCCATCATCGACGCCCTCTGCGCTCACCTTGCCACCTCTGCCCACGACTATGATGCCCTCTTCGCAGCCATCCACAACCGTAGGCTCAACTGGATCCCCGTCCTCCAGATGCAGAAGTACCACACCATTGCGGACATCACCCTTGAGCTCCGCAGAGTCTCCGACAGAAACCCCAGCGTTGATGACAAATCCAAATCTGACGAGAAAAAGACGTCCTCGGAGAGTGTTGTCGGAAATGGTTCGGCGGCTGATGAACACGAGGAGTATGAATCCCCCGAGAGTGAGATTACTGATTCAGGATCTCAAGAAATGCAGACTAGTCCCATGAACGTCAATTTATGTTCCAATCATGAACATTGTGAAGGACGTTCTTCACAGTTTAAGTTGACTAAAGGTTTCACTGCAAAAGAGTCAGTCAAGGGACATATGGTGAATGTAGTAAAAGGATTGAAGTTATATGAAGACATTTTCACAGATTTAGAACTATGCAAGCTGACAGACTTCGTGAATGAGATTCATGCTGCTGGCCAGAATGGAGAACTGTGTGGCGAAACTTTTATATTATTCAACAAGCAGATGAAGGGAAACAAGAGAGAGCTGATTCAGCTGGGTGTTCCAATATTTGGACAGATAAAGGAGGACGTAAAAAGCAATATAGAGCCAATTCCTCCACTTCTCCAAGGTGTCATTGATCACCTGATTCAGTGGCAGTTACTTCCCGAGTACAAAAGACCAAATGGTTGTATTATCAACTTTTTTGAGGAGGGGGAGTTTTCTCAACCGTTCCTCAAACCACCGCATCTGGATCAACCTGTGTCCACTCTTCTACTCTCTGAATCAACAATGGCTTTCGGACGTGTACTTATGAGTGAAAATGATGGAAACTACAAAGGACCTCTCATGCTCTCATTGAAGCAGGGAGGGAGACTTCAATTTCTTTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATAATGATGAGAGGAAACAGTGCTGACATGGCAAGGCATGTAATGTGTCCATCTCCTAACAGAAGGGTCAGCATCACCTTCTTCAGAGTGAGGCCAGATTCCAATCAGTGTCAGTCACCAATTCCTGCTATGACAAATGCAATGACTCTGTGGCAACCAGGCATTGCTAGTCCATATGCTTTGCCAAATGGTGCTCTAAGTAGCTATGAGGGTATGGACATGATGCCAAAATGGGGAATGCTTCCCGGTCCAATGGTGATGCTAACTCCTATGCGTCCTGTGGCATTGACTCCTCGCAAACTTGCTGGTGGTGGAACTGGGGTGTTTTTGCCATGGAATGTGCCATCTAGAAAACCTGCCAGGCATCTTCCCCCACGTGCCCAAAAAGGGAGGCTTCTCACATTACCTTCACCTAACCAAGCAGCATCTGTGTTGAAGGATAAAGACATGTTTAGTTCTGAAGCAGACTTGGGTTTGAAGAAATGTGAATCAAGAAGGTGGCTTCCGCGTTTCAGCTATTTGCTCTACACTATGGAGCATTTTATCTTGTTGTACAAATACGGCCCCACCCCAGCTTTAGTAGAGTATTAA 1707 0.4569 MAAGPTSPSDRPTMAPPPMFISDSVAKDAILAWFRGEFAAANAIIDALCAHLATSAHDYDALFAAIHNRRLNWIPVLQMQKYHTIADITLELRRVSDRNPSVDDKSKSDEKKTSSESVVGNGSAADEHEEYESPESEITDSGSQEMQTSPMNVNLCSNHEHCEGRSSQFKLTKGFTAKESVKGHMVNVVKGLKLYEDIFTDLELCKLTDFVNEIHAAGQNGELCGETFILFNKQMKGNKRELIQLGVPIFGQIKEDVKSNIEPIPPLLQGVIDHLIQWQLLPEYKRPNGCIINFFEEGEFSQPFLKPPHLDQPVSTLLLSESTMAFGRVLMSENDGNYKGPLMLSLKQGGRLQFLFIIIIIIIIIIIIIIIIIMMRGNSADMARHVMCPSPNRRVSITFFRVRPDSNQCQSPIPAMTNAMTLWQPGIASPYALPNGALSSYEGMDMMPKWGMLPGPMVMLTPMRPVALTPRKLAGGGTGVFLPWNVPSRKPARHLPPRAQKGRLLTLPSPNQAASVLKDKDMFSSEADLGLKKCESRRWLPRFSYLLYTMEHFILLYKYGPTPALVEY 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01683 568 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 26 506 IPR044842 GO:0003729|GO:0006402|GO:0032451
Vimu3g01683 568 MobiDBLite consensus disorder prediction 137 157 - -
Vimu3g01683 568 MobiDBLite consensus disorder prediction 97 157 - -
Vimu3g01683 568 Gene3D - 175 352 IPR037151 -
Vimu3g01683 568 MobiDBLite consensus disorder prediction 97 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01683 Vimu-Chr3 30923689 30928581 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01683 K10767 - gmx:100791586 840.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01683 3 30923689 30928581 Vimu3g01683 3 30923689 30928581 ECH
Vimu6g02870 6 25359813 25360277 Vimu3g01683 3 30923689 30928581 PCT