Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01648 ATGGGCATTTCTTCAGAAATTGCAGCAGCTACGGTTGTTTGGCTGTGCCTGTGGAGTGTTGCTGACAGTGTTCTCAACACGAACATCACTACCGTTCTGTGCAACGTTGGTGAGTACACCTCAGGTGATCCTTTTGCTGTCAGTTTATCATATGTTGTTGGAGAATTGGAGAGAGAGACTCCAACGCAGAAAAATTACGATTACTACAACATTTCTCCATATCCTAATGCCTTCGCCTATGGACATGCCGCTTGCAACCTAAATCTTACAACCTCTGACTGCCAAACCTGTCTTGGTGTTGCCAAAACGGCCATGTTCAACGCATGTCCCAAACGGATAGGAGCTCGCTCGGTGCTGCATGATTGTACGATCAGGTATGAGCAGTACCCATTTGACGATTAG 402 0.4652 MGISSEIAAATVVWLCLWSVADSVLNTNITTVLCNVGEYTSGDPFAVSLSYVVGELERETPTQKNYDYYNISPYPNAFAYGHAACNLNLTTSDCQTCLGVAKTAMFNACPKRIGARSVLHDCTIRYEQYPFDD 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01648 133 Gene3D - 25 131 IPR038408 -
Vimu3g01648 133 FunFam Antifungal protein ginkbilobin-2 26 131 - -
Vimu3g01648 133 Pfam Salt stress response/antifungal 34 129 IPR002902 -
Vimu3g01648 133 PANTHER ANTIFUNGAL PROTEIN GINKBILOBIN-2-LIKE 10 131 - -
Vimu3g01648 133 ProSiteProfiles Gnk2-homologous domain profile. 27 131 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01648 Vimu-Chr3 30584656 30585057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01648 80 131 Receptor kinase-like Gene Family AT4G05200 34.615 2.52e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01648 - - var:108324623 265.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02840 6 25106697 25107101 Vimu3g01648 3 30584656 30585057 PCT