Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01405 ATGAAACGCATGGATATCTTCTGTGCGTCTCAAGCCTCAACAGCGATATGTCTCAGCACGGATCAAGCCTCATGCTCATCATCTTCTTCCAACACCATTCTGCTTGGAGGCAGAGTCATTGACCGACACAACCCCATTATCAATGACTCAAGAAGGAGCACTTCCAAATCTCTCACTGCCCCATGTTCCTCTTCTCACTCACCCATCAACCCTAAGCCTTACCATGAGCTCCACAAGCCCAAGAAAAAATCTTCTTCCAAGGGCCATGAAAATCACAAGAAGAAAAACACACCACAAAACCCCACCCCACATCTCACCAACTCTTCTAAACCAGTTGATACCATTGTGGGTAGGAGTTCGCTTAAGCCACCTTCTGCTTCAATCACTCCTCATGCTTCAACTAGATCTTTGCTTGCTGGCTCCTCCTTATTGGATTCTTCTTCACATTATGATCCAGTTTTGGGTCTAACCACTCCCACTGCTAATAGCACAACTTCTCAAGTTGTTTATCAAGATGAAAACGTTCCTGTTCCTGTTTCTAGACTTTCTACCTCTTCTCATCCAAAATCTTCTTCCTCAGACCAGAGCTGCTGTGAAGAGGCACACTTCTTGCAGCTTTATTGTATGGCTAGTCAGGTTGTGGTATTGAGAGTATCTTTGCATTGCAAAGGCTGTGAAGGGAAAGTGAGGAAACATCTCTCCAGAATGCAAGCAGGAGTTACTTCCTTCAACATAGATTTTGCTGCAAAGAAGGTGACAGTTGTTGGGGATGTGACTCCATTGAGTGTCTTGGCTAGCATATCAAAGGTGAAAAATGCACAATTATGGCCAGCAACTGCATCAGCTACTGTTGAAACAAAGTAA 864 0.4433 MKRMDIFCASQASTAICLSTDQASCSSSSSNTILLGGRVIDRHNPIINDSRRSTSKSLTAPCSSSHSPINPKPYHELHKPKKKSSSKGHENHKKKNTPQNPTPHLTNSSKPVDTIVGRSSLKPPSASITPHASTRSLLAGSSLLDSSSHYDPVLGLTTPTANSTTSQVVYQDENVPVPVSRLSTSSHPKSSSSDQSCCEEAHFLQLYCMASQVVVLRVSLHCKGCEGKVRKHLSRMQAGVTSFNIDFAAKKVTVVGDVTPLSVLASISKVKNAQLWPATASATVETK 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01405 287 MobiDBLite consensus disorder prediction 98 132 - -
Vimu3g01405 287 ProSiteProfiles Heavy-metal-associated domain profile. 211 278 IPR006121 GO:0046872
Vimu3g01405 287 CDD HMA 215 269 IPR006121 GO:0046872
Vimu3g01405 287 Pfam Heavy-metal-associated domain 216 269 IPR006121 GO:0046872
Vimu3g01405 287 MobiDBLite consensus disorder prediction 45 132 - -
Vimu3g01405 287 SUPERFAMILY HMA, heavy metal-associated domain 211 270 IPR036163 GO:0046872
Vimu3g01405 287 PANTHER OS08G0405700 PROTEIN 4 283 IPR044526 -
Vimu3g01405 287 Gene3D - 209 274 - -
Vimu3g01405 287 MobiDBLite consensus disorder prediction 50 70 - -
Vimu3g01405 287 MobiDBLite consensus disorder prediction 76 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01405 Vimu-Chr3 26643186 26644372 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01405 - - gmx:100813295 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01405 3 26643186 26644372 Vimu3g01405 3 26643186 26644372 ECH
Vimu6g02598 6 22575254 22577012 Vimu3g01405 3 26643186 26644372 PCT