Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01390 ATGAATGTGGTAGGAAAAGTTGGAAGCTTGATATCTCAAGGTGTGTACTCAGTTGCAACTCCTTTTCACCCCTTTGGTGGAGCTGTTGATGTGATTGTTGTTCAGCAACAAGATGGGACATTTCGGAGTACGCCTTGGTATGTTCGGTTTGGTAAATTTCAGGGTGTTCTCAAAGGTGCGGAAAAGTATGTTAAGATAAATGTTAATGGTGTTGAGGCCAATTTTCATATACTTGATCATAGCATATCGGATTCTGGGGTTCTGAAATTGAAAGAGCAGTGTGATTCCTCAGTTGTGCATGCGCCTCAAATTCAAAGGTCAGAATCTGATATTGATAGGAGATTTTACGAATTCCCAGATGATCGATCTTCTTTAGAAGATTCATTTGAGTTGTCAGAATACGACTCTAATTCATTCGGGAGCCTAGAGGGAGACAATTTTGCAGAGTCACAGGGTGCACATCCAGAGATGGTCTTGCTCTTACACGAAGTTTGTCAAAGAGAGGAGGCACATAGTCAGACACAGGAAAACTTAGAGATTAAAAATCCGGAGGTCAAAACTGATTCAGAAGTGGCTGCATATGGTATCAATAGGGAGAATGTTTTCAAAAGCTGTTTGGAGCTGCAACATTTCGGTCAGCAGGCTGGAAATGCTGCTGATTTACAAGATACAGGTTCTCCATTGGGGATTCAAAATTCAGCAGATCAATCTAATGGAATTAATGAAGATGAACAAGGGAGGATTGTGCAACCTAAAAGCGGTGATGATTTATCACCTCCTGGTTGTTCTATTTCTTCTAATGGCTATGGATATCCAAAATCAGGATTGGTAATTCCAGAGGTTGAGAAAAATGCATCTGGAGAAATTGAAATTGATCCTGGCTATCGTTCAGTTACTACTGAAACAGAACAGAATAATGAACATGCTGTCAAGTCAGTGTCAAATAATGCGGGAGATGAGAGATTTGAGATTTCACTTTGTGGTCATGAACTTAAGCCGGGGATGGGTTCAGTAGCTGCTGCTGAAGTGTTTGAAGCACATCGCATATCTTCAGTTGACTTCACAAGTTCTGCTCCTTCAATAATTAAAAATCCAAATCTTGTTATCAAGTTTAAAGAGAGGTACATGACGTGGGAAAAGGCTTCTCCTCTTGTTCTTGGAATGGCTGTTTATGGTTTAGATTTGCCTGTTGAGCCCAAAGATACGGTTCCCGTGGAACAGGATCAAGCATTGAAGTCTAGGGATAATGATCTAGGATCATCTTCGGCTGGGCGCAGATGGAGACTGTGGTCTATTCCTTTCCGAAAGGTCAAAACATTTGACCATACTAATAGCAATACATCAAATGAGGAGGTGTTTCTTGATTCTGAGTCTGGATCTTTTGCAGACCAAACTCCAACATCCAGTACCCAGGGATCTCCTGGAAAGCAATTTCTAAGAACAAATGTTCCCACTAATGAGCAGATAGCATCCTTAAACCTCAAAGATGGTCAAAATTTGGTAACATTCAGTTTCTCTACAAGGGTTCTCGGTACACAACAGGTTGACATTTATTCACTAACTTCTAAACATTCTTTTATTGACATTTTTTGTTTAAGAGAGAAGCTTTAA 1611 0.4029 MNVVGKVGSLISQGVYSVATPFHPFGGAVDVIVVQQQDGTFRSTPWYVRFGKFQGVLKGAEKYVKINVNGVEANFHILDHSISDSGVLKLKEQCDSSVVHAPQIQRSESDIDRRFYEFPDDRSSLEDSFELSEYDSNSFGSLEGDNFAESQGAHPEMVLLLHEVCQREEAHSQTQENLEIKNPEVKTDSEVAAYGINRENVFKSCLELQHFGQQAGNAADLQDTGSPLGIQNSADQSNGINEDEQGRIVQPKSGDDLSPPGCSISSNGYGYPKSGLVIPEVEKNASGEIEIDPGYRSVTTETEQNNEHAVKSVSNNAGDERFEISLCGHELKPGMGSVAAAEVFEAHRISSVDFTSSAPSIIKNPNLVIKFKERYMTWEKASPLVLGMAVYGLDLPVEPKDTVPVEQDQALKSRDNDLGSSSAGRRWRLWSIPFRKVKTFDHTNSNTSNEEVFLDSESGSFADQTPTSSTQGSPGKQFLRTNVPTNEQIASLNLKDGQNLVTFSFSTRVLGTQQVDIYSLTSKHSFIDIFCLREKL 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01390 536 PANTHER LIPIN 167 520 IPR026058 -
Vimu3g01390 536 MobiDBLite consensus disorder prediction 217 242 - -
Vimu3g01390 536 Pfam lipin, N-terminal conserved region 1 87 IPR007651 -
Vimu3g01390 536 Pfam Lipin/Ned1/Smp2 multi-domain protein middle domain 322 428 IPR031703 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01390 Vimu-Chr3 26246184 26260359 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01390 K15728 - gmx:100798304 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01390 3 26246184 26260359 Vimu3g01390 3 26246184 26260359 ECH
Vimu6g02592 6 22505210 22513366 Vimu3g01390 3 26246184 26260359 PCT