Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01376 ATGATTTTGGAAGAAGTGGTTTTTTCTTCTGTTGGTGAGATTGGAAAAACTGAAGAAATGGCTCCACCTATTGAGACCCCAATCAAGGTTTCCGGCTATCAGCACACCCCACACCCTCCTCTTAACGAGAGGATTCTTTCATCCTTGACCCGGAGGACTGTTGCTGCACACCCATGGCATGATCTTGAGATAGGACCTGAAGCTCCAAAGATCTTCAACTGTGTGGTCGAAATTGGAAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAAAACTGGACTTATCAAGGTTGATCGTATACTTTACTCGTCAGTTGTCTATCCTCACAACTATGGGTTTATCCCTCGTACTATTTGTGAGGACAGTGACCCCATGGATGTCCTGGTTATTATGCAGGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCTATTGGACTCATGCCTATGATCGACCAGGGTGAGAAAGATGACAAGATAATTGCTGTATGTGCTGATGATCCCGAGTATCGTCATTACAATGATATCAAGGACCTTCCTCCCCACCGTTTAGCTGAAATCCGTCGCTTTTTTGAAGATTACAAGAAGAATGAAAACAAGGAGGTTGCAGTAAACGACTTTCTTCCTGCCTCATCTGCCTATGAAGCGATCAAGCATTCCATGACTTTGTACGCAGACTACGTTGTGGAGAGCTTGAGGCGGTAG 708 0.4492 MILEEVVFSSVGEIGKTEEMAPPIETPIKVSGYQHTPHPPLNERILSSLTRRTVAAHPWHDLEIGPEAPKIFNCVVEIGKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTICEDSDPMDVLVIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKDLPPHRLAEIRRFFEDYKKNENKEVAVNDFLPASSAYEAIKHSMTLYADYVVESLRR 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01376 235 CDD pyrophosphatase 71 222 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Vimu3g01376 235 SUPERFAMILY Inorganic pyrophosphatase 51 229 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Vimu3g01376 235 PANTHER INORGANIC PYROPHOSPHATASE 15 235 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Vimu3g01376 235 FunFam Soluble inorganic pyrophosphatase 4 53 231 - -
Vimu3g01376 235 ProSitePatterns Inorganic pyrophosphatase signature. 121 127 - -
Vimu3g01376 235 Hamap Inorganic pyrophosphatase [ppa]. 70 226 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Vimu3g01376 235 Gene3D Inorganic pyrophosphatase 53 231 IPR036649 GO:0000287|GO:0004427|GO:0005737|GO:0006796
Vimu3g01376 235 Pfam Inorganic pyrophosphatase 74 225 IPR008162 GO:0000287|GO:0004427|GO:0005737|GO:0006796
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01376 Vimu-Chr3 25792261 25795316 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01376 K01507 - gmx:100306101 420.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01376 3 25792261 25795316 Vimu3g01376 3 25792261 25795316 ECH
Vimu6g02611 6 22738259 22741800 Vimu3g01376 3 25792261 25795316 PCT