Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01338 ATGGCCACACAAGTGACACTAGTGGCATCAGCATTTCTTTTGCTTCTTTCTATCCCTTTCTCCACTTCCATCTCTCACTCTCACCGTTCCGCTGCCATCAATCTCTTCCCTACCTCTCCCGCAAGCTTAGAAGACGCGTACGAGGCGCTTAGAGTGTTTGAGATTCTTGGATTAGAAGAGAAGAAGACTCACGTGAGCGGGGACGCGTGTCAGAAAGTGTTGGAAAATCTAAACTCGGCTTCCTCTCTCAAGGATTTGTTCTATGCCTTGAAAGTTAACAACATTTTAAAATGCGATGTTAATAGCAACGCTTTAAAGGATATTGCTTCAAGACTTAAAGCTACTGTTCATGAACCTAGTACTTTGCTTGACATATACTACTCAATTGGAGGCTTGGTTCTTATAAAGGATCAGGACTCTAATGTTGATGCGTATCTTGTCGATGTTGACAGGGTTTTTCAATCAATCAAGGAGATGATAGGTTTAGCAATTGAAGCTCTTGCCGGATTGATCTCACTAGAATCTTCTGAAATTGATCCGTCTAAGGTCAATATAGTGAAAAATGACATAGTAAAGCTTTTTGATGTCATTGAGAAATATGATGATGGAACCTTTTATTTTGATGAGAAATTTGTTGGTGGAGAAGAGCAACGGGGTTCTCTTTCTGCAACTTCTTCAGTTGTTAGAGGGTTTACTTCATTTGCTGCTGTAACTTCTGGAGAAATAAACCTTCCAGGGGATAAAATACTGGGTCTGGCAAAATTTTTCTTGGGCATTGGAATCCCAGGAGATGCCAAGGACTTATTTAATCAAATTGAGTCGTTAGCTTTTCTAGAGACCAACAGGCAAGTGATTTCCATTCCATTGATATTGTCAGTCCCTGAAACAGTTTATGCTTTGACCAAGAAAGGCCAGCTTAAGGTTAAGGTGAATACAGTGCTTGGTTCAGCTCCACCACCTTTAACAGTTAAGCTTGCCCATGCTTTTAGCACTGGTGCAAAAGATTCAGCTATTATTGATAGCAAGGAGCTCCAGTATGACCAAGAAAGTGGATTTCATGTCTTAGATGCTTTCCCTAAGAACGTGGACGTGGGAAAATATGTGTTTGTTTTTGAGATTGTGCTTCATGATTCTGGCAGTGAAAAAGTTTATACAACTGGAGGACAAATTCATGTACCGATATATGTCACTGGGTTCATTGAAATCAACGATGCAGAAATCACTGTTGCGGATAGTGATCTTGGACGTGCCCAAACCCAGAAAAAGCTAGATTTGGCTGGAAATGATGTAGTTTCACTCTCAGCTAACCACTTGCAGAAGTTGAAGTTTTCTTTCCAATTGACAACACCTCATGGCCATGCTTTTAAGCCTCAACAGGCATTTTTCAAGATGAGACACGAGACAAAGGTTGAGCACATCTTCATGGATTTTCTTGGCTTGGTGGAGAAACTTTTTTATCTCTCAGGCAGATATGAGATTGAGTTGACTGTTGGTGATGCCGTCATGGAGAATTCTTTCTTACGGCTACTGGGCCATCTCGATTTAGATCTTCCAAAAGCACCTGAGAAAGCAGCCCGTCCTCCACCCCCACCCGTTGACCCTTACTCAAGATATGGGCCGAAAGAAGAGATTACACATTTATTTAGGGCTCCTGAAAAGAAACCACCCCAGAATTTCTCTCTTATATTCTTGGGTTTAATCCTTTTGCCATCCATTGGCTTTTTGGTTGGGTTATTGCGATTGGGAGCGAACCTAAAGAATTTCCCCAGTTCAACAGTGCCTGCTACATTTGGGATCCTTTTCCATGTTGGCATTGCTGGGGTTTTGTTACTTTATGTATTTTTCTGGTTGAAGCTGGACCTGTTCACCACACTCAAGGCATTTGGTCTTTTGGGAGCTTTCCTGGTGTTTGTGGGGCACAGAATTCTTTCTCATATGGCTTTGACATCAGCCAAGTTGAAATCAGCATGA 1971 0.417 MATQVTLVASAFLLLLSIPFSTSISHSHRSAAINLFPTSPASLEDAYEALRVFEILGLEEKKTHVSGDACQKVLENLNSASSLKDLFYALKVNNILKCDVNSNALKDIASRLKATVHEPSTLLDIYYSIGGLVLIKDQDSNVDAYLVDVDRVFQSIKEMIGLAIEALAGLISLESSEIDPSKVNIVKNDIVKLFDVIEKYDDGTFYFDEKFVGGEEQRGSLSATSSVVRGFTSFAAVTSGEINLPGDKILGLAKFFLGIGIPGDAKDLFNQIESLAFLETNRQVISIPLILSVPETVYALTKKGQLKVKVNTVLGSAPPPLTVKLAHAFSTGAKDSAIIDSKELQYDQESGFHVLDAFPKNVDVGKYVFVFEIVLHDSGSEKVYTTGGQIHVPIYVTGFIEINDAEITVADSDLGRAQTQKKLDLAGNDVVSLSANHLQKLKFSFQLTTPHGHAFKPQQAFFKMRHETKVEHIFMDFLGLVEKLFYLSGRYEIELTVGDAVMENSFLRLLGHLDLDLPKAPEKAARPPPPPVDPYSRYGPKEEITHLFRAPEKKPPQNFSLIFLGLILLPSIGFLVGLLRLGANLKNFPSSTVPATFGILFHVGIAGVLLLYVFFWLKLDLFTTLKAFGLLGAFLVFVGHRILSHMALTSAKLKSA 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01338 656 PANTHER RIBOPHORIN II 5 655 IPR008814 GO:0006487|GO:0008250|GO:0016020
Vimu3g01338 656 Pfam Oligosaccharyltransferase subunit Ribophorin II 7 647 IPR008814 GO:0006487|GO:0008250|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01338 Vimu-Chr3 24373519 24381464 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01338 K12667 - gmx:100814831 1015.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01338 3 24373519 24381464 Vimu3g01338 3 24373519 24381464 ECH
Vimu6g02702 6 23556196 23564767 Vimu3g01338 3 24373519 24381464 PCT