Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01316 GTGACTACCATTGGTGATTCCCGGCCGTTATACCACAAGATAGTTGACTCATTCCTGAATAAATTTTTCCCTTCAGGATATCCGTACAGTGTGAATGAAGGTTACCTCAGATACACACAGTTTCGAGCACTGCAACACACTGCCAGTGCAGCTCTATCTGTGTTATCGACTCAGTCACTGCTATTTGCTGCAGGCATGCGGCCCACTCCTGCACAAGCAACTGCTGTTAGTTGGATTTTAAAGGATGGCATGCAACACTTAGGGAATCTCATATGCAGCAATTTAGGTGCAAGAATGGATTCTGAGCCTAAACGTTGGAGAATTTTAGCTGATGTGCTCTACGATGTAGGCACTGGTTTGGAAGTGCTTTCTCCTTTATGTCCTCAGCTCTTTCTTGAAATGGCTGGCCTTGGAAATTTTGCCAAGGGGATGGCAGTTGTTGCATCCAGAGCTACAAGATTACCTATATATTCTTCATTCGCTAAAGAAGGAAACCTAAGTGACCTATTTGCTAGAGGGGAAGCTATTTCAACTCTCTTCAATGTTGTTGGAATTGGAGTTGGAATTCAATTAGCATCGACTGTATGTGCATCAATGCAGGGAAAGTTGGTTGTGGGGCCCCTACTATCATTTATACACATATACAGCGTTACTGAAGAAATGAGAGCTACTCCTATCAATACCTTGAATCCACAAAGAACTGCATTGATTGTGGCTGATTTTCTTAAGGCTGGAAACGTATCAAGCCCAGCTGATCTAAGATATCGAGAAGATTTACTATTTCCTCGGAAGCTAATAGAAGATGCTGGAAACGTACGAGTGGGTAGGGCTTTGCACAAGGCAATTAAACCTTCAAAGCTTCTTGAATCAAAACAAGTATTCCCTGGGGAGAAGTTTCTTTTAAATGGTGATAATAGGTGCATTGATATGGTATTGGAGAAAGATGCTATTGGTGAAGATGCATTGAGAGGGTGGCTGGTTGCTGCATATTCTGTACAATTTAACAAGTCCTCTCATGATCTCAGTAACAGTACCCTGCTGCAGGCCTATGAGAAAATGAATGAGGTGTTCCCTGTGCTTCTGAAAGAATTAGAGTGCAAAGGGTGGCATACAGATCGTTTTCTGGATGGAAGTGGAAGCCGCTTTGCATTGTAG 1155 0.4277 VTTIGDSRPLYHKIVDSFLNKFFPSGYPYSVNEGYLRYTQFRALQHTASAALSVLSTQSLLFAAGMRPTPAQATAVSWILKDGMQHLGNLICSNLGARMDSEPKRWRILADVLYDVGTGLEVLSPLCPQLFLEMAGLGNFAKGMAVVASRATRLPIYSSFAKEGNLSDLFARGEAISTLFNVVGIGVGIQLASTVCASMQGKLVVGPLLSFIHIYSVTEEMRATPINTLNPQRTALIVADFLKAGNVSSPADLRYREDLLFPRKLIEDAGNVRVGRALHKAIKPSKLLESKQVFPGEKFLLNGDNRCIDMVLEKDAIGEDALRGWLVAAYSVQFNKSSHDLSNSTLLQAYEKMNEVFPVLLKELECKGWHTDRFLDGSGSRFAL 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01316 384 Pfam Vitamin B6 photo-protection and homoeostasis 13 244 IPR006968 -
Vimu3g01316 384 PANTHER RUS1 FAMILY PROTEIN C16ORF58 11 383 IPR006968 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01316 Vimu-Chr3 23557359 23567098 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01316 - - gmx:100814176 709.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01316 3 23557359 23567098 Vimu3g01316 3 23557359 23567098 ECH
Vimu6g02714 6 23719481 23722924 Vimu3g01316 3 23557359 23567098 PCT