Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01292 ATGTCCTGGGCTACCATTCTTGAAAAGATTGTTCATTTGCAAAAGTCACAACGACTCTGTGTGGTAAAGAATCTTTCTGCTCATGACATTGTGATGAGGTTGATGCGAAAAGATAACTATTTGATTGGGATGGTCAACAAGGGTGTGCTTACTTTCCCCATTTCTAAATGGGTTCCAGGTGCTGGATCAACAGTGAAATATGGTGCTGATGGAACAGAATATCGTCTAATACTACCCAGAACGCTTGAGTTGGCTTTACATTGGTGCATCCTGCAAAGCATGTTTGACAGAAATTTTTGTGTCAGAATGAGTTTTGTGTCAGATTCAAAGACACTAAAGAGAAGGCTTATGGTAGTTGGGAGTGCAATGTTGTTATTTTCTCCATTTCTTATCATATTCATGCTGTCACATCTTTTTCTGAGGTATGCTGAGCAATTTTATAATCAACCAAGCACAATATCATCCCGAAGATGGTCAAATTTGTCACAATGGGTCTTTAGGGAGTTCAATGAGGTGGATCATTTGTTCAAGCATCGGATTAATAATGGTGTATCTCATGCTTCTATCTATATGAAGCAATTCCCTTCACCAATCAAATCTATTATTGCAAAATTCATCTCATTTGTATCGGGTGGCTTTGTTGCGATTCTGATCATCCTTGCATTTTTAGAAGAGTCTCTGCTGGAGGGTCATATACTTGGTCGGAACTTGTTATGGTATGCTGCTATTTTTGGAGCTATAACTGCTCTTAAACGGGTTGCATTTACAGATAATGAGGTTTTAGTCACTGATCCCGAAGGAGCAATGTCAATGGTAGTTGACCATACACATTATATGCCCAAGAGATGGCGGGGCAAAGAAAGTACTGAAATGGTCCGTAATGAGTTTGAAACCTTATTCCAGTATAGTGGGATGATGTTACTTGAGGAGATGGCTTCAATTTTGGTTACTCCATTCTTGCTTTTGTTTGTGGTCCCAGAGCGGGTTGATGATATCCTGCAGTTTATTGAAAATTTTACTGTATATGTTGAAGGTGTTGGTGATGTTTGCAGCTTTAGTGTCTTCAATTTTCAAGAGTATGGAAACAGCAGCTATGGCTCTCCATTTAATGTGCCTCGTAGCCAGAGAAGTTCCCAAGGGAAGTTGGAGAAATCATTCTTGAGCTTCCATAGTAGTTACCCTTTTTGGGAACCAAATGCTAAAGGAAAGCAGTTTCTACAAAATCTGAGAACATTCAGAGACAAAAAATTAGCAGACCATGTAAAAAGACATGGATTTGTTCCCCTCAAAACATGGAGAGATCACACTACCATGAGAAGCTATACAGACAGAAACAGTTTTACATCCAGGGAAATGTCACATGGTACTTTTGTGACCGGCAATCACTTGGGTTCATTGTTGGTAACTGAATCCAGCAATCGAGACAATATTCCCTATCTTCTAGATTGGTACTACATTTCCCAACCTCGTTATGCAACTCTTAGACATGTTTCAACAAATCGTTTTGAGGTAACTCAGCATCATTCCCCAGATAGGATGCTTCCCATCTCGGAAGAAAACAAACATGATTATGACGAACACATGAACAAGTTTTGCAATGAACGCGCTGATCTGGGTGCTTCCACATCGTCTTTCATCTTCTGGGAAAGCCTAATCGAGGATCCACATTCCATTGATGTGTCTCGCACTATCAAGAGTCGTTGGTGGGAGAGAAGTCAACCTCGGAATGAAGATAGTCAGATAAGCTTTCTGGAACCACCAGATTTCAATCACCAAAGAACATGTAATTACCACGATAAATTTTCCGACAGAGGGTCAGAAGATCAAGGTCAGGAAAACTTGTGTCAGGGTCCACATGATTCTACAAGTTTTTTGGAGCCACAAGATTTGAATCAACAAACAACATACTATTGTCATGATAAATTTTCTGATAAGGGATCAGAAGATCATGATGAGGAGCAATACCTATTCGGGGGTGATTATTATGAGCTACCAAATATGGCAGAAGCAGATAATTTAGACGCAGGAGAATTGAATCTTCATTTTGGTGAGTCTTCCCCCAAAAAATCCCACTGTAAATTAAAGCCTGCAGCCAGCCTTGAAACTCTGGCTTTCGTTTTCGCTATCGCTCTCGGTCTCGCTTTCGCTATTGTTCTTCATTGCATCTCTTTGTTGCATGTGTTCGTTTTGAGCAACGTCGTCGTCTTTGTCGAGTTATTATGCGAAATGGCAGGTTCCGGTAACTATGGTTCTTTGACTAAACTTAAAAGGAAGGTTGTTGTGTTGGAGGCAGAGTTGGCTGAAGAGAAAGCTAGAAGAAGAACAACAGAGGATGTGGATTTAATACCCGGGAGGGATGTCTACCAATCCACCTCCATTGAAGACGTATGTCAGGATGGAGTCACAAAGGCGTTACAGGAGCAAAGCGCTTAG 2433 0.4069 MSWATILEKIVHLQKSQRLCVVKNLSAHDIVMRLMRKDNYLIGMVNKGVLTFPISKWVPGAGSTVKYGADGTEYRLILPRTLELALHWCILQSMFDRNFCVRMSFVSDSKTLKRRLMVVGSAMLLFSPFLIIFMLSHLFLRYAEQFYNQPSTISSRRWSNLSQWVFREFNEVDHLFKHRINNGVSHASIYMKQFPSPIKSIIAKFISFVSGGFVAILIILAFLEESLLEGHILGRNLLWYAAIFGAITALKRVAFTDNEVLVTDPEGAMSMVVDHTHYMPKRWRGKESTEMVRNEFETLFQYSGMMLLEEMASILVTPFLLLFVVPERVDDILQFIENFTVYVEGVGDVCSFSVFNFQEYGNSSYGSPFNVPRSQRSSQGKLEKSFLSFHSSYPFWEPNAKGKQFLQNLRTFRDKKLADHVKRHGFVPLKTWRDHTTMRSYTDRNSFTSREMSHGTFVTGNHLGSLLVTESSNRDNIPYLLDWYYISQPRYATLRHVSTNRFEVTQHHSPDRMLPISEENKHDYDEHMNKFCNERADLGASTSSFIFWESLIEDPHSIDVSRTIKSRWWERSQPRNEDSQISFLEPPDFNHQRTCNYHDKFSDRGSEDQGQENLCQGPHDSTSFLEPQDLNQQTTYYCHDKFSDKGSEDHDEEQYLFGGDYYELPNMAEADNLDAGELNLHFGESSPKKSHCKLKPAASLETLAFVFAIALGLAFAIVLHCISLLHVFVLSNVVVFVELLCEMAGSGNYGSLTKLKRKVVVLEAELAEEKARRRTTEDVDLIPGRDVYQSTSIEDVCQDGVTKALQEQSA 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01292 810 PANTHER APG9 AUTOPHAGY 9 1 604 IPR007241 GO:0006914
Vimu3g01292 810 Coils Coil 752 772 - -
Vimu3g01292 810 Pfam Autophagy protein ATG9 1 356 IPR007241 GO:0006914
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01292 Vimu-Chr3 23028339 23037986 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01292 K17907 - gmx:100809347 903.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01292 3 23028339 23037986 Vimu3g01292 3 23028339 23037986 ECH
Vimu6g02732 6 23857090 23863563 Vimu3g01292 3 23028339 23037986 PCT