Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00905 ATGGGTCTCACACCACTCAACCCAGACAATTTCAAGCCACTCATCCTCAAAGCTGGTGTTCCCTTGGCTGCATCTTTAGCTGGTTTTATCTATGCATGGATACTGGCAAAGAAAAACTTCTCTTCCAAGCTTTTTTCTTCACCAGAAAATGGTGAATCATCTACTCCTATGAATAGGTTGGTGATCCATGACAGAAAGTCATTTTCGGAACACGAGATCACTGGCCTGAGAAACCAGATTGAAGGTCTTCAAATGAGGGAATTGGCCATGCGTTTGCAGTTTGAGCTGTACTGTGAAATGAAGGCACAAGAGTCTCTTCTTGTTGAAGTCAGAAACATGTTGTCGTTGGAGAATGATCGTGCTGAGTTCTTGAGCAAAGAGATTTCTTCCATAGAGACCGAGACAGTGAGGTTGGAGAGTTTTGTAGTCCAATACATGACTGTTGTTGAACAGCTTCAGTATTGGAGATCACAGAATAGGGTGCTTCAAAGGAGGGTTCAAAAGCTTCTCAGGGACTCCAAGGGAAAGTCTCGTTTAATAAAGGTTCAGGCTTTGATGATCAAAGAGAAAGAAGAAGAACTTTTGAGAAACCATGAGGATTTTCAAACAAGGGTATGCGTGATTAACAAGTTAGAGGGTGAAATCAGAGAGCTACGAAGGATTTTGGAGCAACTGGAGGAAGAGAAGAAGGAGGTTGTGAAGAAGCTTGAAACAGCAGAAGCAGAAGCAGATGCATCTAAGCTGAACAAGGAAAAGATACATAGAAAACCATTGAAATATTATTTGGAAGTTGAATCAGGAGATGTGAGTAAGGAAGAGTACAAGAAGATTCTGAATGAATTGGAGGAGATGAAGAAGGAAAGATCAACTGAAGTTGAAGAGCTGATTCATTTGAGGAGGGTGAATACTTGTTTGAGGCAAGAGTTGATGAGGCAGTACGAAGAACATCATGAGCAACATAGAGAGCATGAGGAGGGAGAGTTTGAAGGAGGCTTAGGATTTGTGCAGTATGATTCAGAGCATGAGTTGCATCACAATGATTCTGCTGAGAGTGATCATGCTTCTTCAAAAAGGAAAAAGTTTCTTAAGACTCTGAAAAGGTGGGTTGAAGGAAGTGAAAAGGTAAGAGTGAAGCCTGAAATTATCAAACAATCTTCTGTTTCCTGTGGATCAAAGAAACCTCAAGTTTCTTCAAATTCAAGGTTCTGTTCCAGTGCATGA 1221 0.4111 MGLTPLNPDNFKPLILKAGVPLAASLAGFIYAWILAKKNFSSKLFSSPENGESSTPMNRLVIHDRKSFSEHEITGLRNQIEGLQMRELAMRLQFELYCEMKAQESLLVEVRNMLSLENDRAEFLSKEISSIETETVRLESFVVQYMTVVEQLQYWRSQNRVLQRRVQKLLRDSKGKSRLIKVQALMIKEKEEELLRNHEDFQTRVCVINKLEGEIRELRRILEQLEEEKKEVVKKLETAEAEADASKLNKEKIHRKPLKYYLEVESGDVSKEEYKKILNELEEMKKERSTEVEELIHLRRVNTCLRQELMRQYEEHHEQHREHEEGEFEGGLGFVQYDSEHELHHNDSAESDHASSKRKKFLKTLKRWVEGSEKVRVKPEIIKQSSVSCGSKKPQVSSNSRFCSSA 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00905 406 Coils Coil 267 298 - -
Vimu3g00905 406 Coils Coil 306 326 - -
Vimu3g00905 406 Coils Coil 208 256 - -
Vimu3g00905 406 MobiDBLite consensus disorder prediction 384 406 - -
Vimu3g00905 406 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 16 374 IPR040265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00905 Vimu-Chr3 10989637 10991330 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00905 - - vum:124842227 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00905 3 10989637 10991330 Vimu3g00905 3 10989637 10991330 ECH
Vimu6g02424 6 21170287 21171830 Vimu3g00905 3 10989637 10991330 PCT