Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00895 ATGGCATCAGGGCAACATCAGGATCGAGCTGAGGCAGCTTCGAAAATTGCTGCCAAAGAGCTTGAACAAGCCAACAGAGACAGAGCGCGTGATGATGTGGGCGTTGTGGATGAAGTCAGTGTTGTGGATCAGCAACACGATCAAGATCAAGAAAAGCGTGGTGTGATAGGGTCCATGTTAAGGGCGGTGCAAGAGGCTGTGGCTGGGAAGAAAGAATCAGTTCCAGCGAAAGCACACACCACAGAGGTGATTCATGATGTTAATATCCAACCCGATGACGCGACTGCTGGGGAAGTGAGAGACATATCAGTATCCAAGAATCCTGGGATCTACGATTCTTTAGCCACGGACGAAACCGGTTCCAAGGTTGGTGAATACGCAGATTATGCTGCCCAGAAGGCGAAGGAAACAAAGGATGCAGCAATGAGAAAAGCTGGTGAGTACACTGATTATGCTTCTCAGAAGGCGAAGGAAGCGAAGGACAAGACTATGGAGAAGGGTGGGGAGTATAAGGATTACGCTGCTGAGAAGGCGAAGGAAGGAAAAGATGCTACGGTGAATAAGATGGGAGAGTACAAGGACTACACTGTGGAGAAGACGAAAGAAGGGAAAGACAGTGCTATGGAGAAGCTTGGGGAGCTGAAGGATTCTGCTGCGGATGCTGCTAAGAGGGCTGTGGAATACTTGAGCGGCAAGAAAGAGGAAACCAAAGAGAAGCTCTCGGAATCCGCCGAGGTCGCAAAGAACAAGGCTGCGGCGACGGCAGAGAAGGCCAAGAACAAGGCTGCCGAGACTGCTGATGCAGCGAAGAACAAGACTGCTGAGACGGCTGAGGCAGCTAAGAACAAGGGTAGGGAAATGAAGGACAAGGCTGCAGAAACTGCGGAGGCAGCAAAAAACAAGACTGCAGAAACTGCTGAGACAGCGAAGAACAAGACTGCTGAAACGACTGAGGCAGCAAAGAACAAGGGGAGGGAGATGAAGGACAAGGCTGCAGAAACTGCTGAGGCAGCGAAGAACAAGACTGCTGAAACGAATGAGGCAGCGAAGAATAAGGCTGTGGAGATGAAAGACAAGGCTGCACAAAGTGCAGAGGCAGCAAAGAACAAGACTTCAGAAGCAACTGATGCTGCAAGGTATAAGGCTCTTGAGATGAAGGACAAGGCTGCGGAAAGGGCTGCGGATATCACACAGGCAGCAAAACAGAAAACTGCACAGGCTTGGGACAGAACCAACAAGGAGAATGTGAGAGGAGGAGATGCAGATGCAAGGAGGAAAATGGAGGAGCTAAGGCTACAAGATAAAGGGTTCAAAGATTTTTCTGAAGGACGTGGAGATAATAATAAGGTGGTGATGAAAGTGGAAGAAAGTCGACCAGGGGCAATGGCGGATACACTGAAAGCGGCGGATCAGATGGCGGCGCAGACCTTCAACGATGTGGGACGCTTGGATGAAGAGGGGGTCATAAGAAAGAAATGA 1479 0.5003 MASGQHQDRAEAASKIAAKELEQANRDRARDDVGVVDEVSVVDQQHDQDQEKRGVIGSMLRAVQEAVAGKKESVPAKAHTTEVIHDVNIQPDDATAGEVRDISVSKNPGIYDSLATDETGSKVGEYADYAAQKAKETKDAAMRKAGEYTDYASQKAKEAKDKTMEKGGEYKDYAAEKAKEGKDATVNKMGEYKDYTVEKTKEGKDSAMEKLGELKDSAADAAKRAVEYLSGKKEETKEKLSESAEVAKNKAAATAEKAKNKAAETADAAKNKTAETAEAAKNKGREMKDKAAETAEAAKNKTAETAETAKNKTAETTEAAKNKGREMKDKAAETAEAAKNKTAETNEAAKNKAVEMKDKAAQSAEAAKNKTSEATDAARYKALEMKDKAAERAADITQAAKQKTAQAWDRTNKENVRGGDADARRKMEELRLQDKGFKDFSEGRGDNNKVVMKVEESRPGAMADTLKAADQMAAQTFNDVGRLDEEGVIRKK 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00895 492 MobiDBLite consensus disorder prediction 393 425 - -
Vimu3g00895 492 MobiDBLite consensus disorder prediction 343 364 - -
Vimu3g00895 492 MobiDBLite consensus disorder prediction 314 337 - -
Vimu3g00895 492 MobiDBLite consensus disorder prediction 68 96 - -
Vimu3g00895 492 MobiDBLite consensus disorder prediction 1 32 - -
Vimu3g00895 492 MobiDBLite consensus disorder prediction 12 32 - -
Vimu3g00895 492 MobiDBLite consensus disorder prediction 407 425 - -
Vimu3g00895 492 Gene3D - 195 249 - -
Vimu3g00895 492 Gene3D - 146 194 - -
Vimu3g00895 492 Coils Coil 237 275 - -
Vimu3g00895 492 Coils Coil 292 312 - -
Vimu3g00895 492 MobiDBLite consensus disorder prediction 252 268 - -
Vimu3g00895 492 Pfam Late embryogenesis abundant protein 149 192 IPR004238 -
Vimu3g00895 492 Pfam Late embryogenesis abundant protein 193 224 IPR004238 -
Vimu3g00895 492 Pfam Late embryogenesis abundant protein 178 214 IPR004238 -
Vimu3g00895 492 Pfam Late embryogenesis abundant protein 115 148 IPR004238 -
Vimu3g00895 492 Coils Coil 7 27 - -
Vimu3g00895 492 MobiDBLite consensus disorder prediction 251 375 - -
Vimu3g00895 492 Coils Coil 332 366 - -
Vimu3g00895 492 MobiDBLite consensus disorder prediction 274 297 - -
Vimu3g00895 492 PANTHER LATE EMBRYOGENESIS ABUNDANT DOMAIN-CONTAINING PROTEIN / LEA DOMAIN-CONTAINING PROTEIN 8 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00895 Vimu-Chr3 10830350 10832029 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00895 - - vun:114189667 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02417 6 21120526 21121771 Vimu3g00895 3 10830350 10832029 PCT