Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00647 ATGCCCCCAGTGGTTCAGAACTTCGACCCTGAGGATCTCTTCTCAAGGCGTTGCATTTGGGTGAACGGACCTGTGATAGTAGGTGCTGGTCCTTCGGGTCTTGCAGTGGCTGCAGGCCTCAAAGACCAAGGTGTTCCATTCATAATCCTTGAGAGAGCAAACTGCATTGCCTCTCTCTGGCAAAACCGCACCTATGATCGCCTCAAGCTTCACCTTCCCAAACAGTTCTGCCAGCTTCCAAACTTCCCTTTCCCTGAGGACTTCCCTGAGTACCCCACAAAGTTTCAGTTCATAAGCTACCTTGAGTCCTATGCCAACCACTTCAACATAGCCCCACAGTTCAATGAAACAGTGCAGTCTGCAAAGTACGATGAGACCTTTGGCCTTTGGAGGGTCAAGACCATCAGCAGGAGGAAAGGGCCCTCCTCAGCTGCTGAGTGTGAGGTCGAGTACATTTGCAGGTGGCTTGTGGTTGCCACCGGCGAAAACTCAGAGAAAGTGGTGCCTGAGTTTGAAGGATTGGGAGAGTTTGGTGGCCGCGTCATGCATGCTTGTGAGTATAAATCTGGAGAGGGTTTTGCTGGACAGAAAGTGCTTGTTGTTGGGTGCGGGAATTCAGGCATGGAGGTCTCGCTTGATCTATGTAACCACAATGCAAAACCTTCAATGGTGGTTAGAAGCTCGGTTCATGTTTTACCAAGAGAGGTTTTTGGGAAATCTACTTTTGAAGTTGCTGTGATGTTGATGAAGAGGTTACCTCTGTGGATGGTTGATAAGATACTGCTGATTCTGGCACGTTTGATTTTGGGGAATGTTGAAAAGTATGGTCTGAAAAGGCCTTGTGTGGGTCCTTTGGAATTCAAGCACACCGCAGGGAAGACCCCTGTGTTGGACATTGGGGCCCTTGAGAAAATTAGATCTGGCAAAATCAAAGTGGTTCCTGGAATCAGAAGGTTCTTGCCAGGGAAAGTAGAACTTGTTGATGGCCAAGTTCTTCAGATTGATTCTGTGGTTCTTGCCACTGGTTATCACAGCAATGTACCATCATGGTTGAAGTTGTTGTGTACCCTTATGACTGAGCCCCCCACAGAGGCTTCTGGCCCTATTGAAAGACCAGGGAAGGAAAATGAGTTCTTTTCCAATGATGGAACTCCAAGAAACCCTTTTCCAAATGGGTGGAAAGGAAAAGGTGGTCTTTATGCAGTTGGATTCACAAGGAGAGGCCTTTCTGGTGCATCTTTGGATGCAATTAATGTGGCTCATGACATTGCCAAGAGTTGGAAAGAAGAAACAAAACAGAAGAGGAAAACTGTGGCTGCACGTCACAGGAGGTGCATATCACACTTCTAA 1350 0.4756 MPPVVQNFDPEDLFSRRCIWVNGPVIVGAGPSGLAVAAGLKDQGVPFIILERANCIASLWQNRTYDRLKLHLPKQFCQLPNFPFPEDFPEYPTKFQFISYLESYANHFNIAPQFNETVQSAKYDETFGLWRVKTISRRKGPSSAAECEVEYICRWLVVATGENSEKVVPEFEGLGEFGGRVMHACEYKSGEGFAGQKVLVVGCGNSGMEVSLDLCNHNAKPSMVVRSSVHVLPREVFGKSTFEVAVMLMKRLPLWMVDKILLILARLILGNVEKYGLKRPCVGPLEFKHTAGKTPVLDIGALEKIRSGKIKVVPGIRRFLPGKVELVDGQVLQIDSVVLATGYHSNVPSWLKLLCTLMTEPPTEASGPIERPGKENEFFSNDGTPRNPFPNGWKGKGGLYAVGFTRRGLSGASLDAINVAHDIAKSWKEETKQKRKTVAARHRRCISHF 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00647 449 MobiDBLite consensus disorder prediction 364 391 - -
Vimu3g00647 449 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 25 441 - -
Vimu3g00647 449 PRINTS Pyridine nucleotide disulphide reductase class-I signature 23 45 - -
Vimu3g00647 449 PRINTS Pyridine nucleotide disulphide reductase class-I signature 156 165 - -
Vimu3g00647 449 PRINTS Pyridine nucleotide disulphide reductase class-I signature 197 222 - -
Vimu3g00647 449 FunFam Flavin-containing monooxygenase 24 371 - -
Vimu3g00647 449 Pfam Flavin-binding monooxygenase-like 26 348 IPR020946 GO:0004499|GO:0050660|GO:0050661
Vimu3g00647 449 SUPERFAMILY FAD/NAD(P)-binding domain 25 229 IPR036188 -
Vimu3g00647 449 PRINTS FAD-dependent pyridine nucleotide reductase signature 153 171 - -
Vimu3g00647 449 PRINTS FAD-dependent pyridine nucleotide reductase signature 197 215 - -
Vimu3g00647 449 PRINTS FAD-dependent pyridine nucleotide reductase signature 24 43 - -
Vimu3g00647 449 Gene3D - 24 375 IPR036188 -
Vimu3g00647 449 SUPERFAMILY FAD/NAD(P)-binding domain 196 427 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00647 Vimu-Chr3 6975286 6977355 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00647 K11816 - gmx:100818345 800.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00647 3 6975286 6977355 Vimu3g00647 3 6975286 6977355 ECH
Vimu6g02638 6 23038389 23040220 Vimu3g00647 3 6975286 6977355 PCT